PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0000400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 127aa MW: 13955.7 Da PI: 9.909

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0000400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.2e-05	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H ORGLA02G0000400.1 29 YPCGFCRREFRSAQALGGHMNVH 51 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.3E-6	26	55	No hit	No description
PROSITE profile	PS50157	10.741	29	56	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MNNSSGSSRR EEAWRQQQLI LQAKKARSYP CGFCRREFRS AQALGGHMNV HRRDRARLRL 60 THQPDAALIA SPSTKSTPPL LPNLNYPPPP PHDGASSSSP PHLPRPPADA DADADAGLDL 120 ELRLAFC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development. {ECO:0000269\|PubMed:11006335, ECO:0000269\|PubMed:11943180, ECO:0000269\|PubMed:12324589, ECO:0000269\|PubMed:1352237, ECO:0000269\|PubMed:7477325}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0000400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by KRYPTONITE/SUVH4, member of the histone H3-K9 methyltransferase family that contributes with other factors to the CpNpG methylation of the SUP gene resulting in its silencing. The alternative epigenetic states of the SUPERMAN locus have been called Clark Kent alleles. Positively regulated at an early stage of development by LEAFY and by B class homeotic proteins APETALA3 and PISTILLATA. Later expression is maintained by both the B class homeotic proteins and the C class homeotic protein AGAMOUS. These two steps of regulation require the intervention of additional factors. {ECO:0000269\|PubMed:11898023}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624301.1	2e-86	transcriptional regulator SUPERMAN
Swissprot	Q38895	2e-15	SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBL	A0A0D3EZF7	2e-86	A0A0D3EZF7_9ORYZ; Uncharacterized protein
TrEMBL	I1NW98	2e-86	I1NW98_ORYGL; Uncharacterized protein
STRING	ORGLA02G0000400.1	4e-87	(Oryza glaberrima)
STRING	OBART02G00100.1	4e-87	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	8e-17	C2H2 family protein

Publications ? help Back to Top
Breuil-Broyer S, et al. Analysis of the Arabidopsis superman allelic series and the interactions with other genes demonstrate developmental robustness and joint specification of male-female boundary, flower meristem termination and carpel compartmentalization. Ann. Bot., 2016. 117(5): p. 905-23 [PMID:27098089] Prunet N,Yang W,Das P,Meyerowitz EM,Jack TP SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(27): p. 7166-7171 [PMID:28634297] Uemura A, et al. Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. Plant Reprod, 2018. 31(1): p. 89-105 [PMID:29218596] Xu Y, et al. SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis. EMBO J., 2019. [PMID:29764982]