PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0399300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 265aa    MW: 28846.3 Da    PI: 8.0901
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0399300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.41.1e-09592033128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknra.......tk 79 
                         Gf+  Pt  elv ++L+++++g ++   +v  i    d   + P dL +    +++ + + e ++F++r++  + + r++ a        +
  ORGLA01G0399300.1  59 TGFQDTPTVGELVLRHLRPRLRGFHCADCDVpvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCRRPNVRRTVAeggggggGA 149
                        69999******************9955545442544469*********74334322223.25889999998877655555444566666555 PP

                NAM  80 sgyWka..tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                         g Wk+  tg+ k+v++ +  + + k+   fy   +g + ++    Wv+ ey++
  ORGLA01G0399300.1 150 GGLWKKswTGSGKSVTDLGVVVPWSKTCYCFYrrdEGGRLSTFGGGWVLAEYEI 203
                        899**645899******888888999999***43333444445679******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.1357230IPR003441NAC domain
SuperFamilySSF1019418.37E-2458229IPR003441NAC domain
PfamPF023653.5E-759203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
LAICAAAADH SRASPSSAAT QPTTICWRPS KVKEEVEEDG MVVDPPDDAS EASDNLRATG  60
FQDTPTVGEL VLRHLRPRLR GFHCADCDVP VIGVRDDPAA AAPLDLVARH GGAADRRRGE  120
AFYFVRRRRC RRPNVRRTVA EGGGGGGGAG GLWKKSWTGS GKSVTDLGVV VPWSKTCYCF  180
YRRDEGGRLS TFGGGWVLAE YEITEPGTYR RADEEEDDDD YWVLCHVRKT ASKKRKRNRC  240
DEAVAARAVA GTESKSYLVC GLTAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0399300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029680.0AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637825.10.0uncharacterized protein LOC107275546
TrEMBLI1NVV30.0I1NVV3_ORYGL; Uncharacterized protein
STRINGORGLA01G0399300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173721010