PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0397800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 311aa    MW: 35356.1 Da    PI: 10.2475
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0397800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.12.3e-091674155
            G2-like  1 kprlrWtpeLHerFveav.eqLGGsekAtPktile...lmkvkgLtlehvkSHLQkYRl 55
                       kpr +Wt    ++F ea  e+L  s k +P ++l+    m+  gLtl+++ S LQkYRl
  ORGLA01G0397800.1 16 KPRFVWTLRQKAKFSEAYkEELSRSGKVVPTKLLKrfkSMNETGLTLQNISSRLQKYRL 74
                       79***************8357**********998633379******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.68E-71378IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-111478IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
GEAAQEQPAA QNQPRKPRFV WTLRQKAKFS EAYKEELSRS GKVVPTKLLK RFKSMNETGL  60
TLQNISSRLQ KYRLSLKRQT SHVDQSTSTD STTASSIQTK QTPALLQQII HPRALHTQLA  120
PDVHQVITTN LPQQHIQHYH NMHHQQVERL SEPHSNEPIY KEYNNLAQRF TQVNYHGHSS  180
IHDHHYANII KKLLPPNVMQ PCDLINALPQ QPAAATACCM QSNTQTVSSA LIVKGMQNHP  240
PDHHIQAFGV LDMGTAQYMG QQLNMYTAEG NWRGTTPQNM RPISQVHRHV SEPPPSYFSN  300
KQKQMAGLKK I
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0397800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0072040.0AP007204.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0008D05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1NVT80.0I1NVT8_ORYGL; Uncharacterized protein
STRINGORGLA01G0397800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1985788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-06response regulator 2