PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0397100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 343aa    MW: 37324.4 Da    PI: 6.8611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0397100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-13240286455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  ORGLA01G0397100.1 240 QHTMSERKRREKLNDSFVALKAVLPPG-----SKKDKTSILNRAREYVKSLE 286
                        599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.55E-15234290No hitNo description
SuperFamilySSF474594.71E-17236303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-14239283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10240286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-14242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1708.6E-5284305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDSGGWIVHG YTNGATATGA GNHGFTCGYA ASSCGSWEFE QREQQFISSQ IQHRLNEISM  60
HLSMDDDDDQ SAVYGAAMVD DLLMPSPSTH HAVAAAAGSF PSSSSSSASF RSASVSYSPD  120
TSSSAAAAAA TGFYPELSSQ VAPLLPPPPL VRNEPQHGRY TAGLPPPQVT GGAFRRYARH  180
LGPRRAPKPG ACGQRMFKTA MSALAKMHME TTYRRRQYYY QQAAAAEAAP PPLSGNNQLQ  240
HTMSERKRRE KLNDSFVALK AVLPPGSKKD KTSILNRARE YVKSLESKLS ELEEKNRELE  300
ARLSTRPDDT KNDEEAAAPP EADGEVKRED PVEIEALDNF FIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249ERKRRE
2245250RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0397100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.11e-139putative transcription factor bHLH041
TrEMBLI1NVT10.0I1NVT1_ORYGL; Uncharacterized protein
STRINGORGLA01G0397100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-16bHLH family protein