PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0396300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 250aa    MW: 27339.3 Da    PI: 10.5197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0396300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161055147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W +eEd ll ++v+q+G+++W+ I+  ++ gR++k+c++rw + 
  ORGLA01G0396300.1 10 KGSWRAEEDALLTRLVAQHGPHRWSIISGAIP-GRSGKSCRLRWCNQ 55
                       799*****************************.***********985 PP
2Myb_DNA-binding60.14.8e-1964106347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++T++Ed ll+ a++++G++ W+tIar ++ gRt++++k++w++ 
  ORGLA01G0396300.1  64 PFTPQEDALLAAAHARHGNK-WATIARLLP-GRTDNSVKNHWNSN 106
                        89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.919560IPR017930Myb domain
SuperFamilySSF466894.87E-298103IPR009057Homeodomain-like
SMARTSM007171.1E-14958IPR001005SANT/Myb domain
PfamPF002495.1E-151055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211161IPR009057Homeodomain-like
CDDcd001675.52E-131254No hitNo description
SMARTSM007171.2E-1561109IPR001005SANT/Myb domain
PROSITE profilePS5129419.91461111IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2362109IPR009057Homeodomain-like
PfamPF002491.5E-1664106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGMCSKTRKK GSWRAEEDAL LTRLVAQHGP HRWSIISGAI PGRSGKSCRL RWCNQLSPAV  60
QHRPFTPQED ALLAAAHARH GNKWATIARL LPGRTDNSVK NHWNSNLRRC LRRQAKFKSK  120
DPDLLPDPIN IPPDCIVVLN DDDEPADRPV TPPAIIQAQA QETLPSLTLS LSLSLPGAAA  180
AAAEVEVAPP PPRALAAASE IQDGSSRSSS ASRVMLQVMR QMVREEVQRH TAQLAYSLMA  240
LASCSRRPPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-36101094103MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-351010958157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-351010958157MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-36101094103C-Myb DNA-Binding Domain
1msf_C8e-36101094103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0396300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106310.0AK110631.1 Oryza sativa Japonica Group cDNA clone:002-169-B11, full insert sequence.
GenBankAP0032280.0AP003228.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0020E09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878300.10.0transcription factor MYB44
TrEMBLA0A0D3EZD10.0A0A0D3EZD1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YKV10.0A0A0D9YKV1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0N8C40.0A0A0E0N8C4_ORYRU; Uncharacterized protein
TrEMBLI1NVS30.0I1NVS3_ORYGL; Uncharacterized protein
TrEMBLQ84SF00.0Q84SF0_ORYSJ; Os01g0977300 protein
STRINGOGLUM01G50230.10.0(Oryza glumipatula)
STRINGORUFI01G49370.10.0(Oryza rufipogon)
STRINGOS01T0977300-010.0(Oryza sativa)
STRINGORGLA01G0396300.10.0(Oryza glaberrima)
STRINGOBART01G45880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-48myb domain protein 77