PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0394700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 276aa    MW: 31048.4 Da    PI: 7.1513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0394700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.4e-1458105148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT++Ed +lv  v++lG ++W+  a+  g+ R++k+c++rw +yl
  ORGLA01G0394700.1  58 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYL 105
                        79********************************************97 PP
2Myb_DNA-binding58.91.1e-18111156148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rgr+++eE+   v+++++lG++ W++Ia+ m+ gRt++++k++w+++l
  ORGLA01G0394700.1 111 RGRMSPEEERMVVQLHAKLGNR-WSRIAKSMP-GRTDNEIKNYWRTHL 156
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576125No hitNo description
PROSITE profilePS5129412.98253105IPR017930Myb domain
SMARTSM007177.3E-1157107IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-2757152IPR009057Homeodomain-like
PfamPF002491.8E-1258105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1759112IPR009057Homeodomain-like
CDDcd001671.55E-860105No hitNo description
PROSITE profilePS5129426.873106160IPR017930Myb domain
SMARTSM007178.0E-18110158IPR001005SANT/Myb domain
PfamPF002491.2E-16111156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-25113158IPR009057Homeodomain-like
CDDcd001676.98E-13113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVVAGKKQGR HSFSASSSSS SSSSCSVVQL GHHQRPQGED PLIGIKAAAA GGGGIMRKGP  60
WTEQEDVQLV WFVRLLGERR WDFLAKVSGL QRSGKSCRLR WVNYLHPGLK RGRMSPEEER  120
MVVQLHAKLG NRWSRIAKSM PGRTDNEIKN YWRTHLRKLK LKQQKQQQSD DHHNDDDDDD  180
DRNSSSSSSS SNSNSNLQQQ PQPEDESSAS GSLQAQHHED QHQLFLHPLW NDDIIVDVDC  240
WSSSTNVVAP PPMPASPLWD IDDAFFCSDY SLPLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26581584103MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-265815858157MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-265815858157MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-27551581103C-Myb DNA-Binding Domain
1msf_C9e-27551581103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0394700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3985810.0AY398581.1 Oryza sativa (indica cultivar-group) Myb factor protein (Myb) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621159.10.0transcription factor MYB59
TrEMBLI1NVQ70.0I1NVQ7_ORYGL; Uncharacterized protein
STRINGORGLA01G0394700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-56myb domain protein 59