PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0376000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 22108.1 Da PI: 9.5534 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.2 | 1.7e-19 | 17 | 145 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWk..atgkdke 91 G+ F+Pt++el+ ++L+++++g +++ ++ e+d + + Pw+L ++ +++++e +fFs r++++++ +r+ g W +t + ++ ORGLA01G0376000.1 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLAR-HGRREEGFFFSARARRKPSVRRTVAggGGGGGAWMhsSTKNGQS 107 999*********************9**999**************744.4566788********999766665532244899*8435566678 PP NAM 92 vlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 v++ + + +++ fy +g+ + ++t W+m ey++ ORGLA01G0376000.1 108 VTDLGVVVRWCRINYCFYvRGEMGQQRSTGWMMAEYEI 145 888788999*********888999999*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-31 | 5 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.366 | 14 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-12 | 17 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL 60 LARHGRREEG FFFSARARRK PSVRRTVAGG GGGGGAWMHS STKNGQSVTD LGVVVRWCRI 120 NYCFYVRGEM GQQRSTGWMM AEYEITDPRC YRRADDGEED DFWVLCHVRK SSRPSAAKIS 180 PAKPARRRKP TAAADVRAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0376000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071060 | 0.0 | AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence. | |||
GenBank | AP003687 | 0.0 | AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12. | |||
GenBank | AP004073 | 0.0 | AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641921.1 | 1e-122 | NAC domain-containing protein 48-like isoform X1 | ||||
Refseq | XP_015641928.1 | 1e-122 | NAC domain-containing protein 48-like isoform X2 | ||||
TrEMBL | A0A0D3EYL6 | 1e-144 | A0A0D3EYL6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NV70 | 1e-144 | I1NV70_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0376000.1 | 1e-144 | (Oryza glaberrima) | ||||
STRING | OBART01G43720.1 | 1e-144 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 1e-11 | NAC domain containing protein 47 |