PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0367900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1167aa MW: 127816 Da PI: 8.5034

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0367900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.6e-07	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++lF+++ ++ ++e +e++++ g+t +qV+ +F +R++ +k ORGLA01G0367900.1 74 KKPRDLLNPKAVKSMQSLFAMKDTIGKKETREISASFGVTVTQVREFFASQRTRVRK 130 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.718	71	131	IPR001356	Homeobox domain
SMART	SM00389	0.0028	73	135	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-4	74	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-5	74	137	IPR009057	Homeodomain-like
CDD	cd00086	3.87E-4	74	130	No hit	No description
SuperFamily	SSF46689	8.13E-6	74	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF 120 FASQRTRVRK FVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEVHAQVI EPLRTLEPLE 180 AQQISLPHLV VPQISLQLPV VPQSCAIPVA PIGVMQPTEA KTNPDPIQKE TKQEEVAGVE 240 SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT 300 EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSKAR NLLSRLSKVL 360 VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA LTDDASESRM PEPRKTPLLL 420 TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA 480 KMRAMFMQEK YGKVDTSKVT EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS 540 TSKQSTLSPP DKPEIAVSLK LNVTAKENFI EKLDSKRVIW QIPPEVWIDP AWSLGAGENS 600 KEFEVQTQRN RREKETFYAS LKDIPLNPKG PWDVEMDFDD SLTPEIPIEQ PPDADAMETD 660 SVSTAPPNIV VPVVDKQIGS TSSVSPAVAA GANGAASEPD LELLAVLLKN PQLVFALTSN 720 QGGTLPSEQT VALLDMLKQT GLGLSELVNS LANNSGVQNE PESGPEAIPA SLPSPTPPKD 780 LIARDGWSSE FPSQVRTQNL QHAHLPNRAN APPVASSVQQ SFSNVVSSLP SQPYASASAL 840 PAQTRTNMTS LPQSMISVNP STQHVAPMNN LLSRATVHQH TQSYALTSDP VAVAVHHQPA 900 VNKLAHEVQS ISHPAVSHSS VAESHASYTY TWQSSVATIA ATGRNATPDR WAAPARTTNS 960 FNAAPSNSNH VTYPNQNAYS NHSTQATTYN SYGSAPVSSH SLHPGQGLDR NGYTHAAEYQ 1020 TTTARDALRR NSRSPELGAG AVYGSSSQGY VPEPSRQWNY GQQSYNPEPS SRQWSSGQQS 1080 YNTVTAEPSR QWSSGQQSYS NPAEPSRQWS SSAHAQPSYN PEPSRPWNSG HQSQNPEASR 1140 QWSHHHGKQE RYNPTDGRNS YDQHWRR

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF  120
FASQRTRVRK FVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEVHAQVI EPLRTLEPLE  180
AQQISLPHLV VPQISLQLPV VPQSCAIPVA PIGVMQPTEA KTNPDPIQKE TKQEEVAGVE  240
SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT  300
EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSKAR NLLSRLSKVL  360
VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA LTDDASESRM PEPRKTPLLL  420
TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA  480
KMRAMFMQEK YGKVDTSKVT EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS  540
TSKQSTLSPP DKPEIAVSLK LNVTAKENFI EKLDSKRVIW QIPPEVWIDP AWSLGAGENS  600
KEFEVQTQRN RREKETFYAS LKDIPLNPKG PWDVEMDFDD SLTPEIPIEQ PPDADAMETD  660
SVSTAPPNIV VPVVDKQIGS TSSVSPAVAA GANGAASEPD LELLAVLLKN PQLVFALTSN  720
QGGTLPSEQT VALLDMLKQT GLGLSELVNS LANNSGVQNE PESGPEAIPA SLPSPTPPKD  780
LIARDGWSSE FPSQVRTQNL QHAHLPNRAN APPVASSVQQ SFSNVVSSLP SQPYASASAL  840
PAQTRTNMTS LPQSMISVNP STQHVAPMNN LLSRATVHQH TQSYALTSDP VAVAVHHQPA  900
VNKLAHEVQS ISHPAVSHSS VAESHASYTY TWQSSVATIA ATGRNATPDR WAAPARTTNS  960
FNAAPSNSNH VTYPNQNAYS NHSTQATTYN SYGSAPVSSH SLHPGQGLDR NGYTHAAEYQ  1020
TTTARDALRR NSRSPELGAG AVYGSSSQGY VPEPSRQWNY GQQSYNPEPS SRQWSSGQQS  1080
YNTVTAEPSR QWSSGQQSYS NPAEPSRQWS SSAHAQPSYN PEPSRPWNSG HQSQNPEASR  1140
QWSHHHGKQE RYNPTDGRNS YDQHWRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0367900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066698	0.0	AK066698.1 Oryza sativa Japonica Group cDNA clone:J013073H18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620702.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	I1NUY9	0.0	I1NUY9_ORYGL; Uncharacterized protein
STRING	ORGLA01G0367900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-147	HB-other family protein