PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0362300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 878aa    MW: 99396.9 Da    PI: 7.2437
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0362300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.71.2e-54121301118
               CG-1   1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                        l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n
  ORGLA01G0362300.1  12 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKN 103
                        567889************************************************************************************** PP

               CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                        +tfqrr+yw+L+ ++++iv+vhy++v+
  ORGLA01G0362300.1 104 STFQRRIYWMLDPAYDHIVFVHYRDVQ 130
                        ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.9329135IPR005559CG-1 DNA-binding domain
SMARTSM010764.6E-6912130IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4816129IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.5E-5314399IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.34E-13314397IPR014756Immunoglobulin E-set
CDDcd001020.00931315398No hitNo description
CDDcd002048.34E-11489611No hitNo description
PfamPF136371.6E-9521573No hitNo description
SuperFamilySSF484031.27E-15523614IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-16524614IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.255524584IPR020683Ankyrin repeat-containing domain
SMARTSM002481.9E-4552581IPR002110Ankyrin repeat
PROSITE profilePS5008811.541552584IPR002110Ankyrin repeat
SMARTSM000150.012713735IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181714743IPR000048IQ motif, EF-hand binding site
PfamPF006120.014715734IPR000048IQ motif, EF-hand binding site
SMARTSM000150.83736758IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.169737765IPR000048IQ motif, EF-hand binding site
PfamPF006120.052738758IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MQQQQGFDTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR  60
YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH  120
IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE  180
EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT  240
VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLTFSST IDVLKNSDTW LEEDQIEAIL  300
HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVHAEIV  360
QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE  420
LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGTSERL  480
NRDTAVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL  540
NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS  600
AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRVVG RISDTSAHAQ SGSDDQLALK  660
ESLGAMRYAV QAAGRIQTAF RIFSFRKKQQ AGLQNRGNHI ISIREVGAAS HGMLEKAALS  720
IQKNFRCWKK RKEFLKIRKN VIKIQARVRA HQQHNKYKEL LRSVGILEKV MLRWYRKGVG  780
LRGFHPGAIA MPIDEEDEDD IAKVFRKQRV ETALNEAVSR VSSIIDSPVA RQQYRRMLEM  840
HKQNKDDDEK VEVSPASHVY GSGSHHMCWL SHNNKAMH
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0362300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689320.0AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649554.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLI1NUT30.0I1NUT3_ORYGL; Uncharacterized protein
STRINGORGLA01G0362300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-105Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains