PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0351900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 320aa    MW: 35482.1 Da    PI: 4.9605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0351900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06293316123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C+ C+k+F+++  Lk H +  H
  ORGLA01G0351900.1 293 YVCNSCKKTFNSSGALKDHSKAkH 316
                        9******************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.032293320IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-4293312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0031293316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDVDFWGVVI EPCNKKEIFC PEDTLYHLTS VALDEAYGLK DSNVKVFVEV NDEKFAIGTL  60
SSKRHPHIKV DFCFKKNFQL FHTSLISKVA FCGYQVKNLG KFTDSEGDES DEEVPPDNMI  120
KEAQKSKLPA KSATVASAMQ KAFVKEIEHY EKSKADDDNN ERYSDISVVG ESTGNEDSSD  180
DADYEGKSSD EEETTAKEGE STDEKETPAK EGESSDEEET PAKNTKEENE PVVTPLKTFP  240
HEMAKIEAPI TDNKTGTNTS KRGSHLQVTN PHPAKQAKRT PIKNDTPKRS ASYVCNSCKK  300
TFNSSGALKD HSKAKHPATN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289DTPKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0351900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0696410.0AK069641.1 Oryza sativa Japonica Group cDNA clone:J023026P04, full insert sequence.
GenBankCT8416610.0CT841661.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616378.10.0histone deacetylase HDT2 isoform X2
TrEMBLI1NUH90.0I1NUH9_ORYGL; Uncharacterized protein
STRINGORGLA01G0351900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.17e-13histone deacetylase 2C