PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0349100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 667aa    MW: 74698.3 Da    PI: 6.568
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0349100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19e-1582169197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk++    +++++ + +p +fa+++   +  +  + led  g +W+v+l    +++   ++ GWk+Fv ++++ +g+f+vF+ + rs f  
  ORGLA01G0349100.1  82 FFKIM--VGYFSEN-MDIPLPFARTITDMT--GSNVYLEDAYGLRWRVRL--YLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF-- 164
                        66666..5566666.9**********6443..337***************..999999*************************9998999.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v++f
  ORGLA01G0349100.1 165 TVQIF 169
                        88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-2276174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1977172IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95779172IPR003340B3 DNA binding domain
CDDcd100171.95E-1780169No hitNo description
SMARTSM010199.0E-1382172IPR003340B3 DNA binding domain
PfamPF023629.2E-1282169IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32570665IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-12570663IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-14571661IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-10571663No hitNo description
SMARTSM010190.0035573665IPR003340B3 DNA binding domain
PfamPF023621.4E-7598661IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI  60
RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL  120
RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC  180
ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKPR TDEQRYDLDP RQHDMPVRVC  240
IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS  300
TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE  360
NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR  420
TPGDCFGMPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IDAAPDDCKK  480
DKDVLHSECN KVAQKAHSSV KQDITKDGPR QIAAEIMSSG PKTCELTYVR KNSVQPGYFT  540
SVGQYAGNNS KGQESGGTKS CVVLAVAANS KKFCITIPPP DQTWLELPRR LPVLPRTKKQ  600
ARKILILKDP SMRLWPVLYQ CTPKFNGFIA GWADISRENN LREGDTCEFE LCSNSELSFQ  660
VLVPNLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13749RRRKRVSDPQRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0349100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635300.0AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645658.10.0B3 domain-containing protein Os01g0905400
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLI1NUF10.0I1NUF1_ORYGL; Uncharacterized protein
STRINGORGLA01G0349100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]