PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0346300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 387aa    MW: 40628.2 Da    PI: 7.8995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0346300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11321366655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  ORGLA01G0346300.1 321 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 366
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-14318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-11319370No hitNo description
Gene3DG3DSA:4.10.280.109.3E-15320376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNRMTAPHGG MPPPPMPAAG GLARYGSAPG SLLASIADSV IRGGGVGVVD QLHHHQHQHQ  60
LPPPPPPQQQ QMVGRYFSAE SSGLTSCESS CRTTTTTSTA AAADVGRHPL ERAYGGSGEI  120
HVDASSAAVP LFRHSSSPAG LLSRLMADPH GNGMATTRGM GGYSGGGGDA GAMAHRRLSS  180
QWSFSRQDLP QISEMGGLIP DIGESIVTGG GGNSSSDGAG HGAQSSSFLS SRNFSMSSWD  240
DTNSIMFSPP SSSKKARVAA AAAGDHGDDM VSSFSNIDSQ FGLSKQSSLE MAGMDDFLQL  300
QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVT  360
YIKELQGQVE KLKHDQANCT CSGKHDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0346300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682540.0AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613853.10.0transcription factor bHLH128
TrEMBLA0A0D3EXG10.0A0A0D3EXG1_9ORYZ; Uncharacterized protein
TrEMBLI1NUC30.0I1NUC3_ORYGL; Uncharacterized protein
STRINGORGLA01G0346300.10.0(Oryza glaberrima)
STRINGOBART01G40680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-49bHLH family protein