PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0338700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 410aa    MW: 42472.9 Da    PI: 5.9701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0338700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05106128123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F ++   + H+r+H
  ORGLA01G0338700.1 106 FPCHVCSKEFGSRKAVHGHMRVH 128
                        89*******************99 PP
2zf-C2H216.81.9e-05299321123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk Fs+   L  H+r+H
  ORGLA01G0338700.1 299 HPCKTCGKEFSTGVALGGHMRKH 321
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0012105129IPR007087Zinc finger, C2H2
SMARTSM003550.0089106128IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.14E-9106128No hitNo description
PROSITE profilePS5015711.676106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SMARTSM003555246270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248270IPR007087Zinc finger, C2H2
SuperFamilySSF576676.14E-9294321No hitNo description
SMARTSM003550.019299321IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-10299323IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.219299326IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-4299321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDEEE EEEEGVNPAS KRRRLEDILA  60
ETRGALPLPS PTPSSSGSEG TISDDHGDGI AGAAAAADAP VARVAFPCHV CSKEFGSRKA  120
VHGHMRVHQA DKDKEKEPSL HLALGWTSTG KRGANGNARA VTVAFAPMEQ AVGDDDGDAR  180
AIVLAPAAQP QPQPMVVAEA ANPPNQVADD NHRLPVPAAA PYVGAAAAPA RRRARPKRNA  240
GQGGPYRCSY PGCKGEYRTH QGLGGHVAGH INREKQAAAA AQGGSGGGLG GGARPEGNHP  300
CKTCGKEFST GVALGGHMRK HYDPKKKKKH AGLVLTLSVA PPTPAPAPSI AGAALPPAEV  360
KADVDEHEAE QVPMAPVSPP AEARGNIVRI FGVDIEKPAD EEEQEGGSDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15054KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0338700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.10.0zinc finger protein ZAT1-like
TrEMBLI1NU470.0I1NU47_ORYGL; Uncharacterized protein
STRINGORGLA01G0338700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-09C2H2 family protein