PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0326400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 522aa    MW: 57067 Da    PI: 5.6126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0326400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.2e-06283304223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F+r  nL+ H+r H
  ORGLA01G0326400.1 283 FCLICGKGFKRDANLRMHMRGH 304
                        5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-5280308No hitNo description
SMARTSM003550.012282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552282309IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-5284308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SMARTSM0035568331364IPR015880Zinc finger, C2H2-like
SMARTSM0035522369391IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDSGLGRSSE TSLKALPSMA SNATRNTDPD QQGVRFSSMD QPPCFARPGQ SFPAFPPLFG  60
VQSSSLYVPD DIEAKIGNQF ESNPSPNNPT MDWDPQAMLS NLSFLEQKIK QVKDIVQSMS  120
NRESQVAGGS SEAQAKQQLV TADLTCIIIQ LISTAGSLLP SMKNPISSNP ALRHLSNTLC  180
APMILGTNCN LRPSANDEAT IPDISKTPDY EELMNSLNTT QAESDEMMNC QNPCGGEGSE  240
PIPMEDHDVK ESDDGGEREN LPPGSYVVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH  300
MRGHGDEYKT AAALAKPSKD SSSESAPVTR YSCPYVGCKR NKEHKKFQPL KTILCVKNHY  360
KRSHCDKSYT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG  420
HTPALPMDDI KVTGASEQPQ GSEAMNTMVG SAGYNFPGSS SDDIPNLDMK MADDPRYFSP  480
LSFDPCFGGL DDFTRPGFDI SENPFSFLPS GSCSFGQQNG DS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0326400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0722110.0AK072211.1 Oryza sativa Japonica Group cDNA clone:J013161E15, full insert sequence.
GenBankAK0724170.0AK072417.1 Oryza sativa Japonica Group cDNA clone:J023085P15, full insert sequence.
GenBankAK1008400.0AK100840.1 Oryza sativa Japonica Group cDNA clone:J023123F03, full insert sequence.
GenBankAP0032350.0AP003235.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0039A07.
GenBankAP0035660.0AP003566.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641300.10.0zinc finger protein STOP1 homolog
RefseqXP_015641307.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0D3EWT70.0A0A0D3EWT7_9ORYZ; Uncharacterized protein
TrEMBLI1NTS40.0I1NTS4_ORYGL; Uncharacterized protein
STRINGORGLA01G0326400.10.0(Oryza glaberrima)
STRINGOBART01G38810.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-158C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]