PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0317700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 377aa MW: 41455.6 Da PI: 6.5031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0317700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	216	232	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 + C+ C+k+F+r n++ ORGLA01G0317700.1 216 FICHVCNKTFNRYNNMQ 232 89*********988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.82E-5	285	321	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MRMGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVVPGED 60 GGGEIQEDHK SGMTCLPLLS MLEEGNSKRH EHPVKEEIMS SAHAAGVVEP GVELNIGLPV 120 TGSSAQEVTM EEDDEEEDDD DVGEEEMDEW KPMHGGCKVE GDEEQYGEAV ASVEGSSSIT 180 AVGDMFGGVG AESGVAMSSR YWIPTPAQIL VGPVQFICHV CNKTFNRYNN MQQMHMWGHG 240 REYRKGPESL KGTQTLAMLK LPCYCCAAGC KNNVAHPRAR PLKDFRTLQT HYKRKHGAKP 300 FRCRRCAKPF AVKGDWRTHE KNCGKRWFCA CGSDFKHKRS LNDHVRSFGA HHLPVAESAA 360 AAATTPADKD RIISFQR

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MRMGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVVPGED  60
GGGEIQEDHK SGMTCLPLLS MLEEGNSKRH EHPVKEEIMS SAHAAGVVEP GVELNIGLPV  120
TGSSAQEVTM EEDDEEEDDD DVGEEEMDEW KPMHGGCKVE GDEEQYGEAV ASVEGSSSIT  180
AVGDMFGGVG AESGVAMSSR YWIPTPAQIL VGPVQFICHV CNKTFNRYNN MQQMHMWGHG  240
REYRKGPESL KGTQTLAMLK LPCYCCAAGC KNNVAHPRAR PLKDFRTLQT HYKRKHGAKP  300
FRCRRCAKPF AVKGDWRTHE KNCGKRWFCA CGSDFKHKRS LNDHVRSFGA HHLPVAESAA  360
AAATTPADKD RIISFQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0317700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064334	0.0	AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625834.1	0.0	protein TRANSPARENT TESTA 1
TrEMBL	I1NTI7	0.0	I1NTI7_ORYGL; Uncharacterized protein
STRING	ORGLA01G0317700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	1e-90	WIP domain protein 4