PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0315200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 425aa MW: 45631.4 Da PI: 7.7337 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 93 | 139 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ede l++ v ++G + W+tIa+ ++ gR +kqc++rw ++l ORGLA01G0315200.1 93 KGAWTRQEDEVLKQMVILHGDRKWATIAKSLP-GRIGKQCRERWTNHL 139 79******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 145 | 187 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+e+d l++a+k +G++ W+ Iar+++ gR+++ +k++w+ ORGLA01G0315200.1 145 KDVWTEEDDRTLIEAHKTYGNR-WSVIARCLP-GRSENAVKNHWN 187 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.482 | 88 | 143 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-29 | 90 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 92 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 93 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 94 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-14 | 95 | 139 | No hit | No description |
SMART | SM00717 | 1.1E-17 | 144 | 192 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.239 | 144 | 194 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-15 | 145 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-21 | 145 | 191 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.67E-14 | 148 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MMGSGMPHMY FASSSHGTGA HYQSPGGAPI TMAVPDMGFL VAGIGMAPSS FVMPEGALAA 60 SYSAMATVPV GVVVPQQQSS RFGGNNGNPG SFKGAWTRQE DEVLKQMVIL HGDRKWATIA 120 KSLPGRIGKQ CRERWTNHLR PDIKKDVWTE EDDRTLIEAH KTYGNRWSVI ARCLPGRSEN 180 AVKNHWNATK RSLKSKRRMK KKSVQVVNSP PGQLSPLEEY IRSQYPSAVE TTPPPPAVPA 240 PPSDVIVHGA GSVSAGPTVA TQEPTGTNPS EMGIYLGLGN PAGPTTQQLA AMNLNMSLAP 300 DLNAYNDQRE GYYLPFVPQG NLHYGMHVPA PPVQQQQQQG ISVDQGLHSS CLSLYHPFPG 360 THPVSLDFGC QSSNHANAGG YYSEAGPSSG SGSGDPDDVD VIQMASRQFL MPSEAEVTLD 420 LTRFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-42 | 87 | 195 | 1 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0315200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287995 | 0.0 | AK287995.1 Oryza sativa Japonica Group cDNA, clone: J075101C16, full insert sequence. | |||
GenBank | FJ940215 | 0.0 | FJ940215.1 Oryza sativa Japonica Group clone KCS005D12 Myb protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645142.1 | 0.0 | transcription factor MYB73 | ||||
TrEMBL | A0A0D3EWF0 | 0.0 | A0A0D3EWF0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G37720.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 6e-44 | myb domain protein 118 |