PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0312200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 414aa MW: 44368.6 Da PI: 6.5695 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.5e-18 | 112 | 157 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + ORGLA01G0312200.1 112 KGPWSSDEDTLLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 157 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.1e-17 | 164 | 208 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd ++ a++ +G++ W++Ia+ + gRt++ +k++w++ ORGLA01G0312200.1 164 RKPFTEEEDRIIMAAHAIHGNK-WAAIAKLLV-GRTDNAIKNHWNST 208 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.345 | 107 | 162 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.71E-30 | 110 | 205 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 111 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 112 | 157 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 113 | 165 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.51E-14 | 114 | 156 | No hit | No description |
PROSITE profile | PS51294 | 22.74 | 163 | 213 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-16 | 163 | 211 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 164 | 208 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 166 | 212 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.90E-12 | 166 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSSETAASPP PPPPPNPPAA DSAHSSPASM TDETHGAGAH PDESQPHRSS SSSSSPPVAV 60 DGETRVPLPV RSLPQPSHPS PPPSGEDEDD VVITGQIAVG DAAGAAMEER VKGPWSSDED 120 TLLSNLVEKL GPRNWTLIAR GIPGRSGKSC RLRWCNQLDP QVKRKPFTEE EDRIIMAAHA 180 IHGNKWAAIA KLLVGRTDNA IKNHWNSTLR RRHCTGGRCT QGGVMKRAIP ERPRSVSEEP 240 WPLGNLSSLN VREAMEAPAQ TVSESYVGAW QIGDQSCKTE VVDPPYLARP VAKVGAFKPY 300 NVGPAQSSQK EMLSFATKFD SNLHPFKPEN GVCKFVDPTS FAAEVPNKCG HGCCSSHGQL 360 RKNSLLGPEF NEFEDHPPIS DSSFASLVSE ISSIAWMKSG LQSSDTLAQS VPPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-40 | 109 | 212 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0312200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108582 | 0.0 | AK108582.1 Oryza sativa Japonica Group cDNA clone:002-146-A03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630688.1 | 0.0 | transcription factor MYB1 | ||||
TrEMBL | I1NTD2 | 0.0 | I1NTD2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0312200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8990 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 5e-78 | myb domain protein 109 |