PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0312200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 414aa    MW: 44368.6 Da    PI: 6.5695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0312200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-18112157147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + 
  ORGLA01G0312200.1 112 KGPWSSDEDTLLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 157
                        79******************************.***********985 PP

2Myb_DNA-binding52.89.1e-17164208147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r+++T+eEd ++  a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  ORGLA01G0312200.1 164 RKPFTEEEDRIIMAAHAIHGNK-WAAIAKLLV-GRTDNAIKNHWNST 208
                        789*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.345107162IPR017930Myb domain
SuperFamilySSF466899.71E-30110205IPR009057Homeodomain-like
SMARTSM007171.2E-14111160IPR001005SANT/Myb domain
PfamPF002495.6E-17112157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-24113165IPR009057Homeodomain-like
CDDcd001677.51E-14114156No hitNo description
PROSITE profilePS5129422.74163213IPR017930Myb domain
SMARTSM007176.5E-16163211IPR001005SANT/Myb domain
PfamPF002499.6E-15164208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23166212IPR009057Homeodomain-like
CDDcd001675.90E-12166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSSETAASPP PPPPPNPPAA DSAHSSPASM TDETHGAGAH PDESQPHRSS SSSSSPPVAV  60
DGETRVPLPV RSLPQPSHPS PPPSGEDEDD VVITGQIAVG DAAGAAMEER VKGPWSSDED  120
TLLSNLVEKL GPRNWTLIAR GIPGRSGKSC RLRWCNQLDP QVKRKPFTEE EDRIIMAAHA  180
IHGNKWAAIA KLLVGRTDNA IKNHWNSTLR RRHCTGGRCT QGGVMKRAIP ERPRSVSEEP  240
WPLGNLSSLN VREAMEAPAQ TVSESYVGAW QIGDQSCKTE VVDPPYLARP VAKVGAFKPY  300
NVGPAQSSQK EMLSFATKFD SNLHPFKPEN GVCKFVDPTS FAAEVPNKCG HGCCSSHGQL  360
RKNSLLGPEF NEFEDHPPIS DSSFASLVSE ISSIAWMKSG LQSSDTLAQS VPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-401092121104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0312200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085820.0AK108582.1 Oryza sativa Japonica Group cDNA clone:002-146-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630688.10.0transcription factor MYB1
TrEMBLI1NTD20.0I1NTD2_ORYGL; Uncharacterized protein
STRINGORGLA01G0312200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-78myb domain protein 109