PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0306900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 820aa    MW: 90694.1 Da    PI: 5.8751
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0306900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.92.2e-1184448132374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA+ v+++d + a++lL++++++a  +gd  qRla++f+++L+arla+++s++yk  + ++ +    +++l+a++l+  ++P+ k+
  ORGLA01G0306900.1 444 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSQIYKNYTITRLP---CTDVLKAYQLYLAACPFKKI 532
                        789************************************************************999999...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        sh  aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef++ +a
  ORGLA01G0306900.1 533 SHYFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEFQA-IA 623
                        *****************************************************************************************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        +r+e++++e+L+++++E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+v+++   + ++n++ F++rf eal +ysa+fd+le+++
  ORGLA01G0306900.1 624 SRFEAVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHVFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNI 715
                        ******************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        p+++e+r  +E +l++re+ nv++ceg er er et+++W+ r +++GFk++pl+++++k a+  +r +++d + ++e++ +l++gWk+r L
  ORGLA01G0306900.1 716 PKDNEQRLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRVGFKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRIL 806
                        **********************************************************************77.******************* PP

               GRAS 368 vsvSaWr 374
                        +++S W+
  ORGLA01G0306900.1 807 FALSTWK 813
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.115417794IPR005202Transcription factor GRAS
PfamPF035147.7E-116444813IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MVMDAGVHDV CTMLPGSKRD AHLPLPIYPQ IAAANGFATA EEFDPLLFLS PDAVCGGGGG  60
DYLNIVSAQP ISAASTNGAS PPRDVSVSAS AASSAAAQHD DSEAFSDIVL GYINRMLMAE  120
DIDEKFEHYP VNADDLLAAE KPFLEILADQ SPYSGGSSVE SPDGSSAANS CNSLSPCNCS  180
SSSDGLGAVP QTPVLEFPTA AFSQTPQLYG DLIPTGGMVE SGGAWPYDPT EFYQLQTKPV  240
RENFLSQSSS FASSNGSSVT FSEGFESLLS PAGVLPDVSL NDFVVQNQQA LQFRRGFQEA  300
SKFLPDESKL VIDVDKLYSG DEGSRFLGEV RQETKLVKVK TETSDVESAG HRGKKHFYGD  360
DLDAEEGRCS KHSAQGIDTD HLVRDLMDKV LLCNGETCSK GVKELREALQ HDVAKHSGGG  420
HGKGSSHGKG RGKKQPKKEV VDLETLLIHC AQSVATDDRR SATELLKQIR QHAHANGDGD  480
QRLAHCFANG LEARLAGTGS QIYKNYTITR LPCTDVLKAY QLYLAACPFK KISHYFANQT  540
ILNAVEKAKK VHIVDYGIYY GFQWPCLIQR LSNRPGGPPK LRITGIDTPQ PGFRPAERTE  600
ETGRYLSDYA QTFNVPFEFQ AIASRFEAVR MEDLHIEEDE VLIVNCMFKF KNLMDESVVA  660
ESPRNMALKT IRKMNPHVFI HGVVNGSYNA PFFVTRFREA LFHYSAIFDM LETNIPKDNE  720
QRLLIESALF SREAINVISC EGLERMERPE TYKQWQVRNQ RVGFKQLPLN QDMMKRAREK  780
VRCYHKDFII DEDNRWLLQG WKGRILFALS TWKPDNRSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-514478138375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0306900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619294.10.0scarecrow-like protein 9 isoform X1
TrEMBLI1NT790.0I1NT79_ORYGL; Uncharacterized protein
STRINGORGLA01G0306900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-176GRAS family protein