PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0304700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 17302.3 Da PI: 6.2295 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00095 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H ORGLA01G0304700.1 43 FECKTCSKRFPSFQALGGHRTSH 65 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00089 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H ORGLA01G0304700.1 92 HECAVCGVEFSMGQALGGHMRRH 114 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.69E-6 | 40 | 67 | No hit | No description |
Pfam | PF13912 | 3.5E-12 | 42 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.12E-6 | 90 | 118 | No hit | No description |
Pfam | PF13912 | 7.1E-12 | 91 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 91 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.89 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MESLRVHASA LLSLSSPAAS ASQPTSSSST PAGRRALAAE GVFECKTCSK RFPSFQALGG 60 HRTSHTRLQA KLLSDPAAAA AAAAERDRAR VHECAVCGVE FSMGQALGGH MRRHRGETGT 120 TTVVLADADD SGGATVPQPP EPMPDLNYPP LEDAGDGSEP ELLNLLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0304700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | CT831398 | 0.0 | CT831398.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634661.1 | 1e-85 | zinc finger protein ZAT8 | ||||
TrEMBL | A0A0D9YH22 | 1e-116 | A0A0D9YH22_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FVK8 | 1e-116 | A0A0E0FVK8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WWT8 | 1e-116 | A2WWT8_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NT57 | 1e-116 | I1NT57_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM01G40530.1 | 1e-116 | (Oryza glumipatula) | ||||
STRING | ONIVA01G41740.1 | 1e-116 | (Oryza nivara) | ||||
STRING | ORGLA01G0304700.1 | 1e-116 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-24 | C2H2 family protein |