PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0304300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 217aa MW: 22752 Da PI: 9.6729 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H ORGLA01G0304300.1 59 FECKTCNRQFPTFQALGGHRASH 81 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H ORGLA01G0304300.1 122 HECPVCGLEFPIGQALGGHMRRH 144 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.44E-8 | 57 | 81 | No hit | No description |
Pfam | PF13912 | 1.1E-12 | 58 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.44E-8 | 117 | 144 | No hit | No description |
Pfam | PF13912 | 4.2E-11 | 121 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.806 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSKRSRSMWD MQEFVGSVDT ARVLMLLAQQ SQHGLLGGGG FAAGAQPVVV RGGAHDRVFE 60 CKTCNRQFPT FQALGGHRAS HKRPRQQQQH ALGAGAGADD AGLCLGRQPT PPRPQPAKPR 120 VHECPVCGLE FPIGQALGGH MRRHRAEAEA AATTTTTTTK NGDVGKAAAV KACDGGGVCL 180 DLNLTPSENR AKCRNVVGLG AGGQGVHKAL AMLDCFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0304300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003231 | 0.0 | AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633806.1 | 1e-156 | zinc finger protein ZAT12 | ||||
TrEMBL | I1NT53 | 1e-156 | I1NT53_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0304300.1 | 1e-156 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-24 | C2H2 family protein |