PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0297200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 189aa    MW: 20752.5 Da    PI: 6.9322
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0297200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.73e-5718114197
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre
  ORGLA01G0297200.1  18 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 109
                        69****************************************************************************************** PP

              NF-YB  93 legek 97 
                        +eg++
  ORGLA01G0297200.1 110 MEGDS 114
                        ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-5416122IPR009072Histone-fold
SuperFamilySSF471133.88E-4021118IPR009072Histone-fold
PfamPF008084.2E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-225270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-227189No hitNo description
PRINTSPR006153.0E-2290108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MADAGHDESG SPPRSGGVRE QDRFLPIANI SRIMKKAVPA NGKIAKDAKE TLQECVSEFI  60
SFVTSEASDK CQKEKRKTIN GEDLLFAMGT LGFEEYVDPL KIYLHKYREM EGDSKLSSKA  120
GDGSVKKDTI GPHSGASSSS AQGMVGAYTQ GMGYMQPQSN FHILVVLQSF AFPYMYQVAQ  180
IYCKYPSIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4818109192Transcription factor HapC (Eurofung)
4g92_B4e-4818109192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0297200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3324660.0AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611523.11e-113nuclear transcription factor Y subunit B-2 isoform X2
SwissprotQ5QMG31e-112NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A0D3EVX81e-138A0A0D3EVX8_9ORYZ; Uncharacterized protein
TrEMBLI1NSY21e-138I1NSY2_ORYGL; Uncharacterized protein
TrEMBLQ7E0Y81e-138Q7E0Y8_ORYSJ; CCAAT-binding protein
STRINGORGLA01G0297200.11e-139(Oryza glaberrima)
STRINGOBART01G36280.11e-139(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-68nuclear factor Y, subunit B10