PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0273700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 488aa    MW: 50773.9 Da    PI: 9.6787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0273700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05247269223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ Cg+ Fs ++ L+ H  + H
  ORGLA01G0273700.1 247 SCHRCGEQFSKWEALEAHHLSkH 269
                        7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704246274IPR007087Zinc finger, C2H2
PROSITE patternPS000280248269IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-23271487No hitNo description
Gene3DG3DSA:3.90.228.103.2E-12295464IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA  60
AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN  120
PIAHEVVLST NSRCELKITG FGGCGGLAAA AAGGGVLASP HEADGDGAVV SSFVGTLRPG  180
TPGPGWSHGL QYSGSCRGSM RCTPPRSPNV LLDSRDAAAA GVTAHRASCE DAVKSFGKGG  240
GGGGGLSCHR CGEQFSKWEA LEAHHLSKHA VTELVEGDSS RKIVEIICRT SLLKSESSCV  300
RIERVFKVHN TQRTLARFEE YREAVKLKAS KLPKKHPRCL ADGNELLRFH GATLSCALGG  360
AAGSSSLCAS DKCAVCRIIR HGFSAKKEGK AGVGVFTTST SGRAYESIEA SAGAVVGGDD  420
PAATRKALLV CRVIAGRVHK PLENLKEFAG QTGFDSLAGK VGPYSNIEEL YLLNPRALLP  480
CFVVICKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0273700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLI1NS970.0I1NS97_ORYGL; Uncharacterized protein
STRINGORGLA01G0273700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-138C2H2 family protein