PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0241400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 405aa    MW: 44954.4 Da    PI: 10.5939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0241400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.73.3e-2121120199
                        EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        ffkvl     + ++rl +p +f++++        +g ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +fvvF++
  ORGLA01G0241400.1  21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRY 107
                        56666..3444.457********888******996666799*****************..******************************** PP

                        -SSSEE..EEEEE-S CS
                 B3  85 dgrsefelvvkvfrk 99 
                        dg+++f  + +vf++
  ORGLA01G0241400.1 108 DGNTRF--TAMVFDR 120
                        *99999..6666665 PP
2B353.54.5e-17296382598
                        -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +++ +v  s ++++p  f ++h   ++e ++++l+d+ g++W+v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v++
  ORGLA01G0241400.1 296 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHI 380
                        6788999999*********9995..345679***************4.444455..9**********************9986666..9999 PP

                        E- CS
                 B3  97 fr 98 
                        fr
  ORGLA01G0241400.1 381 FR 382
                        98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2116123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2117125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01418121IPR003340B3 DNA binding domain
CDDcd100171.38E-1819119No hitNo description
PfamPF023627.1E-1921119IPR003340B3 DNA binding domain
SMARTSM010196.1E-1321121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-22284382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-23286382IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-25290382No hitNo description
PROSITE profilePS5086313.944292384IPR003340B3 DNA binding domain
SMARTSM010191.5E-12292384IPR003340B3 DNA binding domain
PfamPF023625.7E-16294382IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA  60
ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR  120
TACEREDLMG GGGGGGGDRP RKKRGRPRTA AASRDAARPK KDSVGKEMVT YRASPSGGQP  180
LQIVDSSWTP EPGSTAVKNE EDADELPVCE LPASSASPPR HVPEGALDAD GGAARRGAAK  240
TRSLQDDLAL ASIPPSIRRY KGYVSRRRAV ATAERQRATE IAHAFRSPLP YCVIRMSTMH  300
VYYSFMMRFP TGFSRQHLPR ERTDVVLRDP GGKVWSVLYI PNTRDRLSRG WCAFARGNCL  360
EEGDYCVFEL VAAAEFRVHI FRVVEPAVPA VRLRRVTVTC GRGPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0241400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032290.0AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614236.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLI1NRC40.0I1NRC4_ORYGL; Uncharacterized protein
STRINGORGLA01G0241400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein