PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0234600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 307aa    MW: 32794 Da    PI: 8.0001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0234600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+lv+++  +G g+W++++r  g+ R++k+c++rw +yl
  ORGLA01G0234600.1 14 RGLWSPEEDEKLVKYISTHGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding51.81.9e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++
  ORGLA01G0234600.1  67 RGSFSQQEESLIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 110
                        899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.67961IPR017930Myb domain
SuperFamilySSF466891.24E-2912108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002493.0E-161461IPR001005SANT/Myb domain
CDDcd001671.87E-121761No hitNo description
PROSITE profilePS5129426.02362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2665117IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002494.1E-1567110IPR001005SANT/Myb domain
CDDcd001673.31E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGHHSCCNKQ KVRRGLWSPE EDEKLVKYIS THGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQQEESLIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS TIKKKLISQA  120
VASLHPSSAD LYYNILDGAG QSIAAASLNA VENAAHGVTQ SPPSSVHNSA AWASFSSHQP  180
IFLPGHGVHG CGGGDLQYAA AVDGEFIRLC RAAEAYQLEN GAAGIVGGQC KPSDHLLAPE  240
GVVARSCLPA FVEQKGGGGG AFLADPAMGP VMDFMDAILG SSTTSAASAS SVDSFSVNTA  300
MQPHWIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0234600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2884870.0AK288487.1 Oryza sativa Japonica Group cDNA, clone: J090040H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645252.10.0myb-related protein Zm38
TrEMBLI1NR560.0I1NR56_ORYGL; Uncharacterized protein
STRINGORGLA01G0234600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128133035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-75myb domain protein 26