PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0215600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 293aa    MW: 31508.1 Da    PI: 9.5391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0215600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.27.5e-24181438126
                NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevl 93 
                        hPtd+elv++yL+++v++  ++  + ++e+d+y ++P dL  k     ++ +++ wyfF++ ++k++ g+r+ ra+   g W++    k+v+
  ORGLA01G0215600.1  18 HPTDQELVTKYLRRHVDSGGNPW-RYVHEADVYAADPDDLTgKyspaVASDGSRAWYFFTTVRSKSTGGQRRARAVGdGGCWHSEAGAKDVV 108
                        9*******************999.88**************84366644444777********************6553899***99999999 PP

                NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmhey 126
                            + + +g ++ + f +++ p+ +++ W+m e 
  ORGLA01G0215600.1 109 GGirSPRPIGRRQFFSFVNKEGPRRVRSGWIMVEI 143
                        86656777************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.80211165IPR003441NAC domain
SuperFamilySSF1019411.24E-3515165IPR003441NAC domain
PfamPF023652.3E-1415142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSPSRPDEAD PAADFGSHPT DQELVTKYLR RHVDSGGNPW RYVHEADVYA ADPDDLTGKY  60
SPAVASDGSR AWYFFTTVRS KSTGGQRRAR AVGDGGCWHS EAGAKDVVGG IRSPRPIGRR  120
QFFSFVNKEG PRRVRSGWIM VEIGLKYAQQ NASSDELVLC KVYRSPRAPP AAAAANKSMA  180
APPPTATKSK TEEAKPPPDD VKPVVAAAQT PDTKILRAAK EAAAAAATGC KRKADVKSSG  240
ARRGKRLCSR CRAETSESDS ETAVLDRSPS IEDETADSSE IHGSSDGKFI RFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-141516319166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0215600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621657.10.0NAC domain-containing protein 2
TrEMBLI1NQL60.0I1NQL6_ORYGL; Uncharacterized protein
STRINGORGLA01G0215600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-15NAC domain containing protein 47