PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0213300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 335aa    MW: 36332.7 Da    PI: 9.0816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0213300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1059.7e-33712111128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                        lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++     
  ORGLA01G0213300.1  71 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqg 160
                        799************.99****998885665443333333665557**********.555555677******************74445655 PP

                NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  ORGLA01G0213300.1 161 gETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 211
                        5778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-3763230IPR003441NAC domain
PROSITE profilePS5100533.33471230IPR003441NAC domain
PfamPF023654.6E-1572211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQQVSQHVN LIKTCPSCGH RAQYEQLQAA  60
AAATIQDLPG LPAGVKFDPT DQELLEHLEG KARPDARKLH PLIDEFIPTI EGENGICYTH  120
PERLPGVGKD GLIRHFFHRP SKAYTTGTRK RRKVHTDEQG GETRWHKTGK TRPVFTGGKL  180
KGYKKILVLY TNYGKQRKPE KTNWVMHQYH LGSDEEEKDG ELVVSKVFYQ TQPRQCGGGS  240
TATAKDLSVD LVAGNNIKAS NAAAEHHHND GVGGGGHGGN NSSMLKEAAG IVDFYNPAAA  300
LIGYSQAAPN NRAAASAHLT MPNFEVHTGG AGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0213300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626614.10.0NAC domain-containing protein 73 isoform X2
SwissprotO494591e-125NAC73_ARATH; NAC domain-containing protein 73
TrEMBLI1NQJ30.0I1NQJ3_ORYGL; Uncharacterized protein
STRINGORGLA01G0213300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]