PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0211000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 364aa    MW: 40528.3 Da    PI: 6.7948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0211000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.11.4e-096114849128
                NAM  49 k......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        +      + +++++ wyfFs  +    +g rk r+++  +g W++    k+vl++ +g+  g ++++ f ++ ++ + +++ W+m e +l
  ORGLA01G0211000.1  61 TgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCWHSEAGAKPVLAAsSGRRLGHRQSFSFITKdDDGQRVRSGWLMVELSL 148
                        145554333457889*****98775..588999976644788**9999999998868889**********5436667789*****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.73421164IPR003441NAC domain
PfamPF023654.1E-950147IPR003441NAC domain
SuperFamilySSF1019411.57E-1652164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGAASRPRRQ CRAPRRLDGG GGGSMDVHPS ELLPRSRCTA PRRLDDDEMD VHPSEQELIE  60
TGFAPAVARS SGDEAWYFFS AVRGLKGGRK ARTVDDGAGC WHSEAGAKPV LAASSGRRLG  120
HRQSFSFITK DDDGQRVRSG WLMVELSLDV DEEEQLVLSK VYFSPRAPGA KKPTTAAAMS  180
RHKRKLSTTD IASPPRRQRR HRVVPSSPPE EPNTSPSPAA APPDQQEGGD DDPDRGSISW  240
WLRRVFGLTA TFTEEESIEL NPWLKDILRP FPPPLPPTPP PPCPSPRRKL IDMPEIREFI  300
MRGSYLGGGP APPRYECDHP AMVMTGGDDQ QQLDEQRRDD VGDDRAHYDR VDGQLQFERH  360
YLQM
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0211000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638896.10.0uncharacterized protein LOC107276912
TrEMBLI1NQH00.0I1NQH0_ORYGL; Uncharacterized protein
STRINGORGLA01G0211000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972