PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0182800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 462aa    MW: 50370.3 Da    PI: 7.856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0182800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-11107132227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C f++ t tCk+G++CkF H++
  ORGLA01G0182800.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132
                        7889********************97 PP
2zf-CCCH40.54.4e-13158183227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C+ff++tG Ck+G++CkF+H++
  ORGLA01G0182800.1 158 GEPDCPFFMKTGKCKFGSKCKFNHPK 183
                        789*********************96 PP
3zf-CCCH31.14e-10212236327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++lC+f+a+tG Ck+ + CkF+H++
  ORGLA01G0182800.1 212 EPLCSFYAKTGKCKFRAMCKFNHPK 236
                        79*********************96 PP
4zf-CCCH39.87.4e-13289314126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C+f++++G Ck+G++C+F+H+
  ORGLA01G0182800.1 289 PGEVDCPFYMKMGSCKFGSTCRFNHP 314
                        57899********************9 PP
5zf-CCCH36.11.1e-11372393526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C+f+++tG+Ck+ drCkF+H+
  ORGLA01G0182800.1 372 VCDFYMKTGFCKFADRCKFHHP 393
                        7********************8 PP
6zf-CCCH33.85.6e-11427449527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         C f+++tG Ck+G +CkF H+p
  ORGLA01G0182800.1 427 VCAFYMKTGVCKFGMQCKFDHPP 449
                        7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0038105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5106132IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8107132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258156184IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6156183IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10158183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6161186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5162183IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267209237IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6212236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4214235IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601288316IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10290314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5292315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4294313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7366395IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7367394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859367395IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8371393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6372393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408422450IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5422449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5425450IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8426449IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4427447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEQAANVE ESYPEQQGEP DCPFFMKTGK CKFGSKCKFN  180
HPKEKVNALA SGKTNDKHLI ADSSILPVRP SEPLCSFYAK TGKCKFRAMC KFNHPKDIEI  240
PSSQNEPKSA VTVEGETDIG SAADSVSAKM QTPVAAAQEF NSKGLPMRPG EVDCPFYMKM  300
GSCKFGSTCR FNHPDRLVLN FPLPLGQTIL PTPESMLLNS SANFMQGFDF HAAHMPVGPG  360
PVTYPQRPGA TVCDFYMKTG FCKFADRCKF HHPIDRSAPD PSANWEPAEE SVQLTLAGLP  420
RREDAVVCAF YMKTGVCKFG MQCKFDHPPP QEAIAKVSNS GS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0182800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116820.0AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622282.10.0zinc finger CCCH domain-containing protein 8 isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLI1NPN80.0I1NPN8_ORYGL; Uncharacterized protein
STRINGORGLA01G0182800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-142floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]