PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0167400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 128aa MW: 13671.5 Da PI: 6.6568 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.4 | 5.5e-34 | 11 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaC++++r +C+++C+lapyfpa++p++f++++ lFG++ +l l+a+ +++ r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l++ ORGLA01G0167400.1 11 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLFGVDGILCRLEAAGPDTvtRRATMASIVFVSDARAADPVHGAYGVIRNLQQELAS 102 7*********9**************************************9555446************************************ PP DUF260 90 lkaelallkee 100 +kae+a+++++ ORGLA01G0167400.1 103 VKAEIAAIRQK 113 ******99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.832 | 10 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-27 | 11 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MADPPPPHHP PCAACAHQGR PSCPAGCPLA PYFPADRPER FEYANLLFGV DGILCRLEAA 60 GPDTVTRRAT MASIVFVSDA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQAQQP 120 PPALEDGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-12 | 11 | 109 | 11 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-12 | 11 | 109 | 11 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0167400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003413 | 0.0 | AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878934.1 | 2e-76 | LOB domain-containing protein 22-like | ||||
TrEMBL | I1NP84 | 3e-87 | I1NP84_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0167400.1 | 5e-88 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15375 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-17 | LOB domain-containing protein 22 |