PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0167100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 251aa    MW: 26838.1 Da    PI: 6.3036
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0167100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-3940137198
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+l+++++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l++lka
  ORGLA01G0167100.1  40 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARLKA 131
                        7******************************************************************************************* PP

             DUF260  93 elallk 98 
                        el+++k
  ORGLA01G0167100.1 132 ELDAVK 137
                        **9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.78139140IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3540137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGDEEAGPSS SGHSSPTSNT STTPPPQPPP PPPPPPHPQA CAACKHQRRR CTPECRLARY  60
FPANQPARFR NAHRLFGIKN ILRVMASASE ELRDDAMKSV VYESDAWVID PVGGAAGIVK  120
GLSQELARLK AELDAVKGLI ELHRRAAAQQ QQQPPVAVAS NGGFLPSPPP PPQGQQQLLF  180
LPPPLPTMML QDGHCDDETV EDDYLVGPPA VDAAAATSTA PERRGDGHAP PANVKEEGNV  240
DHTSSMSFRD R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-224114912118LOB family transfactor Ramosa2.1
5ly0_B2e-224114912118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0167100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638299.19e-95LOB domain-containing protein 11
TrEMBLI1NP810.0I1NP81_ORYGL; Uncharacterized protein
STRINGORGLA01G0167100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158291113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-27LOB domain-containing protein 22