PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0166400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 13569.4 Da PI: 6.9163 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.4 | 2.7e-34 | 10 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaC++++r +C+++C+lapyfpa++p++f++++ l+G++ +l+ l+a+ ++ +r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l++ ORGLA01G0166400.1 10 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLYGVDGILRRLEAAgpDPGTRRATMASIVFVSDARAADPVHGAYGVIRNLQQELAS 101 7*********9***************************************766667************************************ PP DUF260 90 lkaelallkee 100 +kae+a+++++ ORGLA01G0166400.1 102 VKAEIAAIRQK 112 ******99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.021 | 9 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-28 | 10 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MADLPPNHPP CAACAHQGRP SCPAGCPLAP YFPADRPERF EYANLLYGVD GILRRLEAAG 60 PDPGTRRATM ASIVFVSDAR AADPVHGAYG VIRNLQQELA SVKAEIAAIR QKQQQAQPPP 120 PPPEDGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-12 | 10 | 108 | 11 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-12 | 10 | 108 | 11 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0166400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640499.1 | 7e-63 | LOB domain-containing protein 22 | ||||
TrEMBL | I1NP74 | 6e-86 | I1NP74_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0166400.1 | 1e-86 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15375 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-18 | LOB domain-containing protein 22 |