PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0166300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 353aa MW: 38179.9 Da PI: 4.592

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0166300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.9	5.6e-32	22	121	1	99
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+++FG+++vl+l +++ +e +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++ ORGLA01G0166300.1 22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTAR 113 6*********9877************************************************************************ PP DUF260 92 aelallke 99 a+la+l+ ORGLA01G0166300.1 114 ADLAVLQG 121 *99876 PP
2	DUF260	112.4	3.1e-35	171	262	1	91
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++ ORGLA01G0166300.1 171 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 262 6*********************9978**********************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.823	21	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-28	22	120	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	19.221	170	272	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-28	171	262	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG 60 MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARADLAVLQ 120 GQDQDQPPAV ATLPEPELVV HPPTMAQDES KPSSTTSSSS GTTTTKKNKP RCAACRYLSR 180 SCWPECLLAP YFPAGQPPAQ FGNVHRLFRL NNVLRMMEET RREERDDLMA AIVYEADAWA 240 RDPRYGVAGV VRSLTNELAR VRLDEIAFHL LGTDETYDGY KEEDALAVDP VSGAQAGIGV 300 LGGSGADLQE NTGILLGADE PGPGELAVDP IKDVFDIDRL LAVDDDLSSG TQP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG  60
MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARADLAVLQ  120
GQDQDQPPAV ATLPEPELVV HPPTMAQDES KPSSTTSSSS GTTTTKKNKP RCAACRYLSR  180
SCWPECLLAP YFPAGQPPAQ FGNVHRLFRL NNVLRMMEET RREERDDLMA AIVYEADAWA  240
RDPRYGVAGV VRSLTNELAR VRLDEIAFHL LGTDETYDGY KEEDALAVDP VSGAQAGIGV  300
LGGSGADLQE NTGILLGADE PGPGELAVDP IKDVFDIDRL LAVDDDLSSG TQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-20	23	269	12	108	LOB family transfactor Ramosa2.1
5ly0_B	1e-20	23	269	12	108	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0166300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638289.1	0.0	uncharacterized protein LOC107278430
Refseq	XP_025882396.1	0.0	uncharacterized protein LOC107278430
TrEMBL	I1NP73	0.0	I1NP73_ORYGL; Uncharacterized protein
STRING	ORGLA01G0166300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23188	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-21	LOB domain-containing protein 25