PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA01G0163600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 46969.5 Da PI: 5.0386 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.2 | 1.3e-07 | 361 | 401 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L ORGLA01G0163600.1 361 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 401 69******************966......***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 358 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.73E-11 | 358 | 406 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-13 | 358 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-11 | 360 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-5 | 361 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 465 aa Download sequence Send to blast |
MDRGFNEMIL SESVWNGGGG GDGDGGAVVL PPEVGGVNAV DGSGMTVLER LVLDEALAAA 60 ILELQGIQAP GCGGGGGGKV EVVPPTAAGD GGVEAAVAFA AMATGTPAYA DVDADVLQRQ 120 RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VAPPPPPPAF ATAAASVDGG GAIDATVFSG 180 IGTDDVVDAV SATVAMTTAT ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA 240 ADMSSQDNSL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGS 300 GGGGCGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA 360 ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF LKSQIRELQT LDRRNYPNAA 420 MSMNTAAATM ATSSSPTYNN SNAAMPAFAL PETLGCGGGG VEQLI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 361 | 366 | RQRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA01G0163600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003141 | 0.0 | AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05. | |||
GenBank | AP003296 | 0.0 | AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629736.1 | 0.0 | transcription factor LATE FLOWERING-like | ||||
Refseq | XP_015629741.1 | 0.0 | transcription factor LATE FLOWERING-like | ||||
TrEMBL | I1NP46 | 0.0 | I1NP46_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0163600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21330.1 | 9e-35 | bHLH family protein |