PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0154000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 361aa    MW: 39069.3 Da    PI: 5.9441
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0154000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161764148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l + + ++G g+W+++++  g+ R++k+c++rw +yl
  ORGLA01G0154000.1 17 RGLWSPEEDEKLFNHISRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 64
                       788*******************************************97 PP

2Myb_DNA-binding51.52.3e-1670113146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+el++ ++k lG++ W+ Ia+ ++ gRt++++k++w++
  ORGLA01G0154000.1  70 RGSFSQQEEELIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 113
                        899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24967IPR009057Homeodomain-like
PROSITE profilePS5129418.8451264IPR017930Myb domain
SuperFamilySSF466892.25E-2914111IPR009057Homeodomain-like
SMARTSM007173.0E-131666IPR001005SANT/Myb domain
PfamPF002492.2E-141764IPR001005SANT/Myb domain
CDDcd001678.12E-122064No hitNo description
PROSITE profilePS5129425.97265119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2668119IPR009057Homeodomain-like
SMARTSM007175.4E-1669117IPR001005SANT/Myb domain
PfamPF002491.0E-1470114IPR001005SANT/Myb domain
CDDcd001671.44E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRESAAACS PKPKLRRGLW SPEEDEKLFN HISRYGVGCW SSVPKLAGLE RCGKSCRLRW  60
INYLRPDLKR GSFSQQEEEL IISLHKILGN RWSQIASQLP GRTDNEIKNF WNSCLKKKLR  120
QRGIDPATHK PLNDGGAGAE EEHHDDGDKQ QQQQQLMDDV DDCFAIGGGG SSDSLAPPHS  180
PAVSFDPLSV TNVPTTMMQS SSSPYGAAGG EHSSFRSDTL CDYGGSGGGV DVVSDAGTYS  240
AYTGDSSSNS NSTAWTCGSV VVGGAGELPP PPLLPHMDMF GRVDAEPPPY PPFDVPARFS  300
PWHHHHHHHH EPTLPTPPQR LDGGGGAAAS FPIRSLSRDM PESCFDLGRG ALDDEFGVDF  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131193108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKKKLRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0154000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643158.10.0myb-related protein Hv33
TrEMBLI1NNV00.0I1NNV0_ORYGL; Uncharacterized protein
STRINGORGLA01G0154000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-75myb domain protein 86