PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0153900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 95aa MW: 9940.3 Da PI: 11.9803 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.5 | 1.3e-12 | 42 | 82 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++ +rk++NR++A+rsR+RK+++++eL+ v++L a N aL ORGLA01G0153900.1 42 RKRKRKESNRLSAQRSRARKQQQLDELAGQVAALRARNGAL 82 6789**********************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-4 | 38 | 95 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.185 | 40 | 82 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.5E-10 | 40 | 82 | No hit | No description |
Pfam | PF00170 | 1.6E-9 | 42 | 82 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.74E-8 | 42 | 83 | No hit | No description |
CDD | cd14702 | 7.18E-13 | 43 | 82 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 45 | 60 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASPGVVCTT VTPTSSAGSD QVVAGGGEAA RRPVAPAVME ERKRKRKESN RLSAQRSRAR 60 KQQQLDELAG QVAALRARNG ALGLAAREAA RRCAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 46 | RKRKRK |
2 | 41 | 47 | RKRKRKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0153900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110526 | 1e-158 | AK110526.1 Oryza sativa Japonica Group cDNA clone:002-167-H10, full insert sequence. | |||
GenBank | AP004233 | 1e-158 | AP004233.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17. | |||
GenBank | AP004361 | 1e-158 | AP004361.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24. | |||
GenBank | AP014957 | 1e-158 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-158 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641337.1 | 1e-58 | ocs element-binding factor 1 | ||||
TrEMBL | A0A0D3EPW7 | 3e-57 | A0A0D3EPW7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YA69 | 3e-57 | A0A0D9YA69_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FMU5 | 3e-57 | A0A0E0FMU5_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1NNU9 | 6e-58 | I1NNU9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q8RYP6 | 3e-57 | Q8RYP6_ORYSJ; Os01g0542700 protein | ||||
STRING | OGLUM01G22270.1 | 5e-58 | (Oryza glumipatula) | ||||
STRING | OS01T0542700-01 | 5e-58 | (Oryza sativa) | ||||
STRING | ONIVA01G21240.1 | 5e-58 | (Oryza nivara) | ||||
STRING | ORGLA01G0153900.1 | 1e-58 | (Oryza glaberrima) | ||||
STRING | OBART01G18790.1 | 5e-58 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13757 | 24 | 28 |