PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0119700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 444aa    MW: 49122.6 Da    PI: 4.7784
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0119700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC85.17.7e-2721122199
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        q+  fw ++   ie ++df +h +P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+av++t+ +
  ORGLA01G0119700.1  21 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIISSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWACAQSHNRCIILDTDIAEAVASTESY 112
                        68899*7655669******************************************************************************* PP

              NF-YC  90 dflvdivprd 99 
                        dflvdi  ++
  ORGLA01G0119700.1 113 DFLVDILHNH 122
                        *****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.29E-1644120IPR009072Histone-fold
PfamPF008082.4E-944106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-1945119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEQTLDVHRS LRPPMPMAQQ QMDEFWRDRQ KEIEMTKDFS EHMIPMARLK KIISSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWACAQ SHNRCIILDT DIAEAVASTE SYDFLVDILH  120
NHSVKQKSTP CSSTKRCRLV VQPSASHIPH QHLLPQFAPT YTSAIPITPS LMPLISQCTP  180
SSFPSLPQEK FPLMAPTPIV NRSMLFIDNI ARGLGLQGNN INAVANNNIL DNIVGCSSPA  240
VLASMMNLAL LGPSGAPLNP PNSQSYNCTM DIINSNDACG SNNSSVIIAN QANIAPSGHF  300
YPIALQSSFS TFLHSNNNDT ITAIPEGVDI SDIMHVTSDV DAATKVFSGQ EEQHEKETNV  360
EWHHQNEIYE SIDIGIIIAT TRDGNKCSIS WDELGMAEDS LLDNFLEELQ VRKDDVSDTR  420
IAFNKDPFLD DVVLSNPSTS NGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-1731119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0119700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032050.0AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04.
GenBankAP0038520.0AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635714.10.0uncharacterized protein LOC4326495 isoform X1
RefseqXP_015635723.10.0uncharacterized protein LOC4326495 isoform X2
RefseqXP_015635732.10.0uncharacterized protein LOC4326495 isoform X3
TrEMBLI1NMV70.0I1NMV7_ORYGL; Uncharacterized protein
STRINGORGLA01G0119700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-26nuclear factor Y, subunit C4