PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0104900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 292aa    MW: 32367.8 Da    PI: 5.5774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0104900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-152370148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd  l+ +v+  G g+W+  ar  g++Rt+k+c++rw++yl
  ORGLA01G0104900.1 23 RGPWTVEEDAVLAGYVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 70
                       89********************************************97 PP
2Myb_DNA-binding53.94.2e-1776119146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg +T++E++l+++++ ++G++ W++Ia++m+ gRt++++k++w++
  ORGLA01G0104900.1  76 RGDFTPQEQLLILELHFRWGNR-WSRIAQHMP-GRTDNEIKNYWRT 119
                        899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1681870IPR017930Myb domain
SuperFamilySSF466899.36E-3021117IPR009057Homeodomain-like
SMARTSM007171.4E-112272IPR001005SANT/Myb domain
PfamPF002491.4E-132370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-212477IPR009057Homeodomain-like
CDDcd001675.18E-82570No hitNo description
PROSITE profilePS5129422.45371125IPR017930Myb domain
SMARTSM007176.5E-1575123IPR001005SANT/Myb domain
PfamPF002494.7E-1676119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2378124IPR009057Homeodomain-like
CDDcd001675.34E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDAPCGWTTS AAAAVAEEED VRRGPWTVEE DAVLAGYVAA NGEGRWNELA RAAGLRRTGK  60
SCRLRWLNYL RPDVRRGDFT PQEQLLILEL HFRWGNRWSR IAQHMPGRTD NEIKNYWRTR  120
VQKHAKQLGC DVNSRQFKDV MRHLWMPRLV ERIHAAAASS ERAAPPPCAA APAHSGMCYS  180
PDPSTTTSST AGSSVTHGEQ FPSSTNHHLM TMASVTTAAA DWSSEQCGSG SATSTSVGIS  240
DDMFEGSWSE LLARAYDDDG ADSSLLPDFQ MADTGDNCWW SNLEDIWSQQ PY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-232011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0104900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416150.0AK241615.1 Oryza sativa Japonica Group cDNA, clone: J065186D02, full insert sequence.
GenBankAP0028830.0AP002883.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0487H02.
GenBankAP0031400.0AP003140.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630818.10.0transcription factor MYB2-like
TrEMBLA0A0D3EMV60.0A0A0D3EMV6_9ORYZ; Uncharacterized protein
TrEMBLI1NMF90.0I1NMF9_ORYGL; Uncharacterized protein
STRINGORGLA01G0104900.10.0(Oryza glaberrima)
STRINGOBART01G12500.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.15e-79myb domain protein 112