PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0097800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 301aa    MW: 32736.8 Da    PI: 5.9944
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0097800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092352682255
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  ORGLA01G0097800.1 235 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 268
                        59*****************************885 PP
2ELK33.21.2e-11188209122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++Ll+KYsg+L+ L++EF+
  ORGLA01G0097800.1 188 ELKEMLLKKYSGCLSRLRSEFL 209
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-214185IPR005540KNOX1
PfamPF037908.8E-214383IPR005540KNOX1
SMARTSM012562.5E-2891142IPR005541KNOX2
PfamPF037911.5E-2494141IPR005541KNOX2
SMARTSM011883.6E-6188209IPR005539ELK domain
PROSITE profilePS5121310.423188208IPR005539ELK domain
PfamPF037891.4E-8188209IPR005539ELK domain
PROSITE profilePS5007112.843208271IPR001356Homeobox domain
SuperFamilySSF466894.28E-19210273IPR009057Homeodomain-like
SMARTSM003891.1E-13210275IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-27213271IPR009057Homeodomain-like
CDDcd000861.28E-13220272No hitNo description
PfamPF059206.4E-17228267IPR008422Homeobox KN domain
PROSITE patternPS000270246269IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEDLYSIHPG ISRVGGAASE ASGVGVVVGG GGGSSSSDLT ELMKAQIAGH PRYPTLLSAY  60
IECRKVGAPP EVASLLEEIG RERRAGGGGG GAGQIGVDPE LDEFMEAYCR VLVRYKEELS  120
RPFDEAASFL SSIQTQLSNL CSGATSPPAT TATHSDEMVG SSDEDQCSGE TDMLDIGQEQ  180
SSRLADHELK EMLLKKYSGC LSRLRSEFLK KRKKGKLPKD ARSALLEWWN THYRWPYPTE  240
EDKLRLAART GLDPKQINNW FINQRKRHWK PSDGMRFALM EGVAGGSSGT TLYFDTGTIG  300
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203212LRSEFLKKRK
2209213KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0097800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288830.0AB028883.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634297.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP290.0KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0D9Y7A20.0A0A0D9Y7A2_9ORYZ; Uncharacterized protein
TrEMBLI1NM880.0I1NM88_ORYGL; Uncharacterized protein
STRINGOGLUM01G14210.10.0(Oryza glumipatula)
STRINGORGLA01G0097800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]