PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0096800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 490aa MW: 52888.4 Da PI: 7.0336

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0096800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.6e-38	110	169	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++ ORGLA01G0096800.1 110 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHV 169 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	107	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MAALRQGDNP AIKLFGRTIP LLLDPAAAAA ADEDEVMPNL GNGVKTNNDL PLVSDKLLIV 60 KGIPFCPNNS KKNDLQGISR PDGRIEIDSM TEDVKTEPDG SVPEKILKKP DKILPCPRCN 120 SMETKFCYFN NYNVHQPRHF CRNCQRYWTA GGAMRNVPVG AGRRRNKHVL KYRQAMMTCN 180 NTVAPGDVSD VVHHQVITHG SSLLPATLKE NETPTEFISE VPPCKSSASI LDIGEPNDTD 240 LVPLASGDNK EEKSCASSVV VSSCSENLMP DNAIMKEPNN RSGCCNGVAL PFPTGPALVL 300 PWSLGWNSVA LMPATQCSTQ PVLGLKDGIP CPPSWPPQLM VPAPGICTPV VPIPLVPPLW 360 SCFPGWPNGM WNAQCPGGNT TVLPSTAPNK ISCSGSSSLV LGKHSREESL QEEEKTRNYL 420 WVPKTLRIDD PAEAAKSSIW ATLGIKPDDK GIFKSFQPNV AKNGTAPESP QALQANPAAF 480 SRSQSFQETT

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MAALRQGDNP AIKLFGRTIP LLLDPAAAAA ADEDEVMPNL GNGVKTNNDL PLVSDKLLIV  60
KGIPFCPNNS KKNDLQGISR PDGRIEIDSM TEDVKTEPDG SVPEKILKKP DKILPCPRCN  120
SMETKFCYFN NYNVHQPRHF CRNCQRYWTA GGAMRNVPVG AGRRRNKHVL KYRQAMMTCN  180
NTVAPGDVSD VVHHQVITHG SSLLPATLKE NETPTEFISE VPPCKSSASI LDIGEPNDTD  240
LVPLASGDNK EEKSCASSVV VSSCSENLMP DNAIMKEPNN RSGCCNGVAL PFPTGPALVL  300
PWSLGWNSVA LMPATQCSTQ PVLGLKDGIP CPPSWPPQLM VPAPGICTPV VPIPLVPPLW  360
SCFPGWPNGM WNAQCPGGNT TVLPSTAPNK ISCSGSSSLV LGKHSREESL QEEEKTRNYL  420
WVPKTLRIDD PAEAAKSSIW ATLGIKPDDK GIFKSFQPNV AKNGTAPESP QALQANPAAF  480
SRSQSFQETT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0096800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066984	0.0	AK066984.1 Oryza sativa Japonica Group cDNA clone:J013091E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635234.1	0.0	cyclic dof factor 2
TrEMBL	I1NM78	0.0	I1NM78_ORYGL; Uncharacterized protein
STRING	ORGLA01G0096800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-62	cycling DOF factor 2