PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0073200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 972aa MW: 106506 Da PI: 4.8825 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.8 | 9.3e-12 | 40 | 76 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l ORGLA01G0073200.1 40 ILSTAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 76 6888******************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.4 | 9.4e-20 | 82 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l ORGLA01G0073200.1 82 KGPWSKEEDEIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 128 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.5 | 1.9e-15 | 134 | 176 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ ORGLA01G0073200.1 134 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 176 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.18E-11 | 38 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 38 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.04E-9 | 38 | 76 | No hit | No description |
PROSITE profile | PS50090 | 7.445 | 38 | 76 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.6E-4 | 38 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-9 | 39 | 76 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 31.183 | 77 | 132 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-31 | 79 | 175 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-18 | 81 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 82 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.84E-16 | 84 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 89 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 132 | 183 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.815 | 133 | 183 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 133 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-14 | 134 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-11 | 136 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 972 aa Download sequence Send to blast |
MESLLDLRRL LKKEKSAMNQ KGDDLSMGKR LKALLTIDAI LSTAVQTYNG KNWKKIAECF 60 PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKL GPKKWSTIAQ ALPGRIGKQC 120 RERWYNHLNP GINKEAWTQE EEITLIHAHR MYGNKWAELT KFLPGRTDNS IKNHWNSSVK 180 KKVNSYMSSG LLTQVSCLPL NEYSANCNSS PAMTQQNSED SGCFAVREVE NSSGCSQSSL 240 AKVSCSQVHD TTVPLGCDLQ VNANFDKNEA HDSQSSMGPQ ACYTSAEAVA SALPAVHCHV 300 SSSNLDPDQH LQEDFAQGLN LDMTIDEMPT VPSFADNQTV CSIENHERSL EPYDVAMEVP 360 LSMLSSDSGA EQKLHFMSEA DFNSPNCLKS ELWQDISLQG LLSGPDAVEA DSFSRSNHQL 420 DVYSSEADTH FLAPPYMPQT SNSSSVMGLA DDQSPQMSVP PSLICSNAMT DDAPFDNRPG 480 RKEMPLSQAE VVTQSSSSSG DAEMFANPGC SNDRHVPSST MESIPECGDQ QVTNAEEPEA 540 SLEKEPSLTQ SVTAPDEQDK GALYYEPPRF PSLDVPFVSC DLVTSGDLQE FSPLGIRQLM 600 HSTMNVCTPM RLWGSPTHDE STGVLLKSAA KSFICTPSIL KKRHRDLLSP IPDKRIEKKY 660 GTEKDRGVSD TSSTGIQTSC INATKDDALI TTVLRIERSA SSKSLEKKLV FSDENKENLG 720 YTTEQTKDGK SAGNDEHMDE QTTGERSSAT NVATNADLSG NLQPAGILIE HSGDDPISSD 780 YGKNTMNQKL NTNVKSLSVC KEGVCAKSKP TELIVEKSSP CINVDYEYVN ILADTPGIKR 840 GLESPSAWKS PWFVDMHFQG SYFTSPADSY DALGLMKQIN VQTAAALVEA REVLASGGQC 900 DNISSDKENT GNPDAKKEPG TTKLQTKIMA EGRVLDFECT TPVRSSDKNA GSNLGRYLSS 960 PIPSSHLLKS FR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-62 | 38 | 183 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-62 | 38 | 183 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0073200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318601 | 0.0 | AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625869.1 | 0.0 | transcription factor MYB3R-1 | ||||
TrEMBL | I1NLJ2 | 0.0 | I1NLJ2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0073200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-123 | myb domain protein 3r-4 |