PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0062300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 581aa    MW: 60256.8 Da    PI: 7.4247
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0062300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.2e-35209309286
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaess 78 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +                ++++s++ ++s 
  ORGLA01G0062300.1 209 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptaggagagnaAAPPSSSTHPDSA 300
                        79**************************************************************8888888888887765555555533333 PP

                TCP  79 sssas.nss 86 
                        ++s++ ++ 
  ORGLA01G0062300.1 301 ENSDDqAQA 309
                        333330222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-30209282IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257211269IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MGLIPYPWRL GYGIRRGGWT RIGAATVAAG KKAAGDLDPR HHHHRVTHGG DGGGVGGGGS  60
GGQEEADEQQ RQQHDHHRLL QLHHHQGVQQ DQEPPPVPVF HLQPASVRQL SGSSAEYALL  120
SPMGDAGGHS HHHQHGFQPQ LLSFGGVGHH HHLHQFTAQP QPPAASHTRG RGGGGEIVPA  180
TTTPRSRGGG GGGGGEIVAV QGGHIVRSTG RKDRHSKVCT ARGPRDRRVR LSAHTAIQFY  240
DVQDRLGYDR PSKAVDWLIK NAKDAIDKLD VLPAWQPTAG GAGAGNAAAP PSSSTHPDSA  300
ENSDDQAQAI TVAHTAFDFA GGGSGGTSFL PPSLDSDAIA DTIKSFFPMG GTAGGEASSS  360
TAAAQSSAMG FQSYTPDLLS RTGSQSQELR LSLQSLPDPM FHHQQHRHGG GGGGGNGTTQ  420
QALFSGAANY SFGGGAMWAT EQQAQNQRML PWNVPDPGGG GGAAYLFNVS QQAAHMQAAA  480
AAALGGHQSQ FFFQRGPLQS SNQPSERGWP ETVEADNQMS HHQGGLSPSV SAAIGFAAPG  540
IGFSGFRLPA RIQGDEEHNG GGGGNGDKPP PPSSVSSASH H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20216269154Putative transcription factor PCF6
5zkt_B2e-20216269154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0062300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718050.0AB071805.1 Oryza sativa Japonica Group mRNA for transcription factor PCF5, complete cds.
GenBankAK2416580.0AK241658.1 Oryza sativa Japonica Group cDNA, clone: J065191F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634261.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLI1NL830.0I1NL83_ORYGL; Uncharacterized protein
STRINGORGLA01G0062300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-57TCP family protein