PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0057600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 484aa MW: 51458.5 Da PI: 8.5018 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 2.8e-06 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H ORGLA01G0057600.1 74 YVCEICGKGFQRDQNLQLHRRGH 96 9********************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.83E-8 | 73 | 96 | No hit | No description |
PROSITE profile | PS50157 | 11.801 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0069 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 74 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 44 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-4 | 139 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.83E-8 | 146 | 171 | No hit | No description |
SMART | SM00355 | 150 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV 60 IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE 120 AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ QHGGGMLFSQ VADVLDHQAA 240 MAMGGHGLMQ ELCLKREQQQ QFAPSWLTAQ QQQQQLEAMA GAGNPAAMYG SARLDQEFIG 300 SSTPESGGAQ QAGLSFGFSS TSSAPPHPAA SSAHMSATAL LQKAAQMGAT LSRPSSHAHM 360 APAAAASTHN SSSSAATTNA PPPPPTSNVS STCVGAGGYG LAFEASHFIA ADESSRGARS 420 DRDTGNGVAG AGNDGLTRDF LGLRAFSHGD IMSMAGFDPC MSTTSASSAA PYDHHHHSNK 480 PWHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 8e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 113 | KLKQRNPKEVVRKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0057600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105663 | 0.0 | AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622491.1 | 0.0 | protein indeterminate-domain 7 | ||||
TrEMBL | I1NL36 | 0.0 | I1NL36_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0057600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-105 | indeterminate(ID)-domain 7 |