PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0057000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 870aa MW: 97722.9 Da PI: 8.1813 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.1e-09 | 46 | 78 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W+++E ++++a +++G++ Wk++++ +g g+++ ORGLA01G0057000.1 46 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 78 6*****************99.*********.9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-8 | 42 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.91 | 42 | 99 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-4 | 46 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-7 | 46 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-4 | 47 | 78 | No hit | No description |
Pfam | PF06584 | 6.0E-30 | 486 | 586 | IPR033471 | DIRP domain |
SMART | SM01135 | 1.1E-32 | 486 | 587 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 870 aa Download sequence Send to blast |
MGPAKGSRTI TKITIKGYDD RQHDEDPNSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR 60 RHGKNWKKVS ASVGGKSADT VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSQDESK 120 SHKGSDQTVR ASGKVRKREA TGQKEKEAPH AHRSYHERRT SGLSSFKKRY YGELVKNIPR 180 HPSGKRTPRV PVIFPADMNV AHAGIPETEN AINCTKKASG ATNNELECSS HGSPGISESA 240 KFVQGQTFLE AKGTGSLKKR RIEQSMEQGQ TIKDEHETAM VAKEGNDLTE YQRLTNLFSP 300 DEMLVLDVLE SLVTVPSKIS EPKINIPSGT LGRDDSALSH RREEGPSVKR SKQGKQVGEC 360 SASKTRNKRR KKLIAEEVPT EGVTSNHLDL PEERQVDATE CALNSDLERG TVDLPESTAN 420 ISTKIPDLPS QLKPEINMSR RSKRKSKSPC GSKYVVCNGA DNLQARRLQH CLSSESLRRW 480 CTYEWFYSAV DYPWFMDNEF VNYLNFANLS HLSRLTRSEW STIRSSLGKP RRFSDHFLAA 540 EKDKLENYRK KVRQYYALLS EDSWDSLPPD LARPFSIGQQ VIVRHPSTRE LCDGKVVMME 600 QDRYNVQFDR PDLGVDEVKD TDCMPVNWLD NLPDDLKKRS FLSNNSHNRV EVEQIPKLTS 660 KENWDHISGE AEPSKTMHIT SDEQVEIAVD IERLSNKSTS GNCGPLQPLQ SVDDNVRSRG 720 LSEHRNGHND ELDSYITSFV QMSLAQAKQM VDEAMKEISE NGKSSLEETG ISNEACKGPE 780 PESAANSELP RNLIFNCIAT LLAIKHFSEG RHPPPNIAGV LERACLMLRP SCAENLPIYN 840 EIENFIAVIK NQILALVPSA SSNARLPMYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 345 | 352 | PSVKRSKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0057000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064472 | 0.0 | AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619147.1 | 0.0 | protein ALWAYS EARLY 2 isoform X1 | ||||
TrEMBL | I1NL30 | 0.0 | I1NL30_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0057000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8696 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 7e-61 | DNA binding |