PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0055800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 306aa MW: 32726.1 Da PI: 10.0745

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0055800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.7e-15	121	165	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky ORGLA01G0055800.1 121 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 165 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.68	3	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	19.454	114	170	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-19	115	171	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-18	117	169	IPR006447	Myb domain, plants
SMART	SM00717	7.0E-12	118	168	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	118	164	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-12	121	165	IPR001005	SANT/Myb domain
CDD	cd00167	2.18E-10	121	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MARKCSSCGN NGHNSRTCTG QRSLQESGGG YGGGGAGGVR LFGVQLHVGG APLKKCFSME 60 CLSSPSPAYY AAVAAAASNS SPTVSSSSSL VSVEEAGEKM ANGYLSDGLM ARAQERKKGV 120 PWTEEEHRKF LVGLEKLGKG DWRGISRHFV TTRTPTQVAS HAQKYFLRQS SLTQKKRRSS 180 LFDVIEDAEK APSVNERLKL RHETTSVPAE MGFPALSLGI SSMAQPEAML LPPPSLTLTP 240 SCSSPAVSSS SSEQPRKIHP SLMVAKPQVQ LQLQPPDLEL KISTVRQNDQ PSSSPRTPFL 300 GTIRVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0055800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT841992	0.0	CT841992.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C107I07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625837.1	1e-177	transcription factor MYBS3-like
Swissprot	Q7XC57	1e-51	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0D3EKK3	0.0	A0A0D3EKK3_9ORYZ; Uncharacterized protein
TrEMBL	I1NL18	0.0	I1NL18_ORYGL; Uncharacterized protein
STRING	ORGLA01G0055800.1	0.0	(Oryza glaberrima)
STRING	OBART01G05900.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4231	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	5e-50	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]