PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0055000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 486aa MW: 54361.1 Da PI: 7.9771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.1 | 2.9e-35 | 96 | 238 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+Ptd+el+ e+L++kv+++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ ORGLA01G0055000.1 96 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdv 185 799************.99******9996775553333333666646**********.555666799******************75666664 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l ORGLA01G0055000.1 186 qKGETRWHKTGKTRPVMV-SGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 238 433778************.9999**********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-39 | 91 | 257 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.27 | 96 | 257 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-16 | 97 | 238 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MYTSPTLLAL SFALLLLILL LYYLSSLLYS QLATRRRLTH ACARSLPDAY ESGMNRGHIS 60 SSELIDAKLE ERRISTAKHC PSCGNKLDCK PDWVGLPAGV KFDPTDQELI EHLEAKVREE 120 GSRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT TGTRKRRKIQ 180 TECDVQKGET RWHKTGKTRP VMVSGRQKGC KKILVLYTNF GKHRKPEKTN WVMHQYHLGD 240 LEEEKEGELV VCKIFYQTQP RQCSWSSDRG GGAAATASAV TTAAVQQDQQ RRRDSGSGSC 300 SSTRDHEVSA TSYSTAGYAV AAAVEMQHLK HAADHFSFAP FRKSFEEVGI SGDQVHSNQL 360 GRSEQQHAGQ EQQPHRPLLA TTTAVPATAF LISRPTNPVS NIVPPAMQHA SVVLDHDQFH 420 VPAILLHHDK FQQQQQKLDR RSAGLEELIM GCTSSSTKGE ASIPHSQETE WPYQPYWTPD 480 NQDHHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-12 | 94 | 238 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0055000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU541472 | 0.0 | EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615071.1 | 0.0 | NAC domain-containing protein 75 isoform X6 | ||||
Swissprot | Q9M0F8 | 1e-154 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | I1NL10 | 0.0 | I1NL10_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0055000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-116 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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