PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA01G0050200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 238aa MW: 25170.1 Da PI: 4.0098 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 34.6 | 4.2e-11 | 115 | 198 | 17 | 99 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99 ++ +lPl r+k+i+++d d+k+++ ea l++ a elf+ l+ + + aa + + dfl+d p ORGLA01G0050200.1 115 QRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAGAHRAXXXXXXXXXXAVHVRAAAREhRPTADFLLDCLPAA 198 4668*************************************9999988888888888888888877654156889999998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.69E-10 | 117 | 210 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.9E-13 | 119 | 196 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.8E-9 | 119 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MAAAAVADEV TEAMEQVEGE REEADAVADE AAEVMEQAEG EREEAIDAVA GEAGEVMEEV 60 VEGEREEANA MADEADEAME PEGEREEEAD AVADEATEPM EQVEGEGEDG DAAAQRPALP 120 LGRVKRIIRV DRDIKKVTNE AALLIAAATE LFVGSLAAGA HRAXXXXXXX XXXAVHVRAA 180 AREHRPTADF LLDCLPAAEE AAPARAAAAG PSRGGGRGEA KPLPRGTRRI DAFFQKTT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA01G0050200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP002484 | 0.0 | AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879187.1 | 1e-116 | tropomyosin | ||||
TrEMBL | I1NKW2 | 1e-147 | I1NKW2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0050200.1 | 1e-148 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |