PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0040700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 265aa    MW: 28137.4 Da    PI: 8.7621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0040700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-152471148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l+  ++++G  +W++++   g+ R++k+c++rw +yl
  ORGLA01G0040700.1 24 KGLWSPEEDERLATHIARFGVSCWSSVPDLAGLQRCGKSCRLRWMNYL 71
                       678*******************************************97 PP
2Myb_DNA-binding46.58.2e-1577119145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rgr++  E+el++ ++ +lG+  W+ Ia++++ gR+++++k++w+
  ORGLA01G0040700.1  77 RGRFSHHEEELILALHDKLGNS-WSQIAARLP-GRSDNEIKNFWN 119
                        89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-221874IPR009057Homeodomain-like
PROSITE profilePS5129415.9721971IPR017930Myb domain
SuperFamilySSF466893.44E-2722118IPR009057Homeodomain-like
SMARTSM007179.3E-112373IPR001005SANT/Myb domain
PfamPF002496.9E-142471IPR001005SANT/Myb domain
CDDcd001671.29E-82771No hitNo description
PROSITE profilePS5129423.92472126IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2575126IPR009057Homeodomain-like
SMARTSM007177.9E-1476124IPR001005SANT/Myb domain
PfamPF002498.8E-1377119IPR001005SANT/Myb domain
CDDcd001679.58E-979119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMMGRAVEQQ QSGCCSEKKK KLRKGLWSPE EDERLATHIA RFGVSCWSSV PDLAGLQRCG  60
KSCRLRWMNY LRPDLKRGRF SHHEEELILA LHDKLGNSWS QIAARLPGRS DNEIKNFWNA  120
RLRKKLRQTE SSSSATTAAG AAATGHRRGE ADRSRPPPPP PPASFNTFSH DDRTTPAPAA  180
HIAAAAAVEA PAAMTTTGGA VGGGVLVDNS GGHRDAVAEA ARGHVGGGDD DGFLAVLLGE  240
YYLDAGGHGD GFSFLGGGGG GHVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262212625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RLRKKLR
2121127LRKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0040700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643964.11e-139transcription factor MYB61
SwissprotQ8VZQ22e-56MYB61_ARATH; Transcription factor MYB61
TrEMBLI1NKL70.0I1NKL7_ORYGL; Uncharacterized protein
STRINGORGLA01G0040700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.18e-58myb domain protein 86
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]