PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0034200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 898aa    MW: 98740.8 Da    PI: 8.4425
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0034200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06251268118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H+C   CH GpCppC
  ORGLA01G0034200.1 251 CGIHRCPVDCHDGPCPPC 268
                        ****************** PP
2zf-NF-X116.51.8e-05358377119
           zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                        CG+HkC + CH+G C + C+
  ORGLA01G0034200.1 358 CGRHKCPERCHRGSCVEtCR 377
                        ***************99997 PP
3zf-NF-X116.51.8e-05411430120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+H C + C+eG+C pCp+
  ORGLA01G0034200.1 411 CGRHACRRRCCEGDCAPCPE 430
                        ******************96 PP
4zf-NF-X122.32.9e-07438457120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+HkC ++CH+G C pCp+
  ORGLA01G0034200.1 438 CGNHKCLSPCHRGACAPCPL 457
                        ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.42E-697155No hitNo description
PROSITE profilePS500898.91998149IPR001841Zinc finger, RING-type
PROSITE patternPS01359098148IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.02198216IPR000967Zinc finger, NF-X1-type
PfamPF014220.034199215IPR000967Zinc finger, NF-X1-type
CDDcd060087.52E-9241289No hitNo description
SMARTSM004380.0011251270IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-5251268IPR000967Zinc finger, NF-X1-type
CDDcd060082.93E-7294334No hitNo description
SMARTSM004380.082304323IPR000967Zinc finger, NF-X1-type
PfamPF014220.41304322IPR000967Zinc finger, NF-X1-type
CDDcd060085.34E-9348397No hitNo description
SMARTSM004380.035358378IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033358377IPR000967Zinc finger, NF-X1-type
CDDcd060083.97E-9401449No hitNo description
SMARTSM004380.087411430IPR000967Zinc finger, NF-X1-type
PfamPF014220.004411429IPR000967Zinc finger, NF-X1-type
CDDcd060081.44E-10428476No hitNo description
SMARTSM004380.0038438457IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-5438456IPR000967Zinc finger, NF-X1-type
SMARTSM0043825501516IPR000967Zinc finger, NF-X1-type
PfamPF0142236505515IPR000967Zinc finger, NF-X1-type
SMARTSM00438170524569IPR000967Zinc finger, NF-X1-type
PfamPF0142288524533IPR000967Zinc finger, NF-X1-type
SMARTSM00438200606624IPR000967Zinc finger, NF-X1-type
PfamPF014220.35606616IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1660678IPR000967Zinc finger, NF-X1-type
PfamPF0142212660677IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44723744IPR000967Zinc finger, NF-X1-type
PfamPF01422170725737IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MPFSYAAAAS GSASSSRKPV PVAAAAARRP APSPSNPSAV SDSDPSSYSS GEETDLTASD  60
PAAASVISSY LSVAGDGADL SKVGIFLSSA ARRRSPPCLI CFDPIRLSDP VWSCSASCFA  120
LLHLHCIQSW AHQSSSAAPS PTWGCPKCRF PYPKSQTPTS YLCFCSKTVD PAPDPWILPH  180
SCGDVCGRRL NADRDSGCEH NCLLLCHPGP CPPCPAIVPN AMCFCGSHRE TRRCSHQRYS  240
CSGKCNKRLG CGIHRCPVDC HDGPCPPCAV RGKHKCECGE TMEERLCSER VFQCKRECGG  300
MLQCGKHSCE RGCHAGKCGG CPLQGRRTCP CGKKDYPSLD CDAEAATCGS TCEKVLGCGR  360
HKCPERCHRG SCVETCRLVI TKSCRCGGLK KEVPCYQELT CERKCQRLRN CGRHACRRRC  420
CEGDCAPCPE VCDKRLRCGN HKCLSPCHRG ACAPCPLMKT ISCNCGQTFF EVPCGTEKNQ  480
KPPKCSKKCN IARLCRHKLE CRPHKCHYGA CPPCKLICGE ELSCGHRCKL RCHGPIAPPN  540
PEFTLKPIKR KKEKHIDSTP GTPCPPCQEV VLVPCFGQHL GQERAILCSK RRQFPCQNLC  600
GNPLNCGNHY CTKACHVLQI PLSQPEGDQL AILSLASASA FAEPCEECNL PCQRVREPPC  660
SHPCPLPCHL NDCPPCKALV KRPCHCGAMV HAFECMYYNN LNATKQQKVR SCGGPCHRKL  720
PNCPHLCSEI CHPGQCPSVD QCMKKVNVRC ACNNLKKEWI CQDVLKEYRQ SGRDPKQIPK  780
NQYAVGLLAC GEDCVKKVKA ADSELHLRKI QEIKTPAVEV ENVPKRRKKR NRGQESVESS  840
KFQEIKAVAL KFLLVIFLCI IVVAGLYLLW KGVYRLSDWM NDMEEQRARQ RHLKPGRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0034200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLI1NKF20.0I1NKF2_ORYGL; Uncharacterized protein
STRINGORGLA01G0034200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors