PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA01G0032300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 304aa MW: 33859.2 Da PI: 6.5113 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9e-18 | 32 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+e+++da ++G + Wk+I +++g ++t q++s+ qky ORGLA01G0032300.1 32 RERWSEEEHERFLDALIMYGRD-WKKIEEHVG-TKTTIQIRSHAQKY 76 78******************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-18 | 26 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.769 | 27 | 81 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-9 | 29 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-18 | 30 | 79 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.91E-10 | 34 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDRNTNNNSN SSSSSEMPGK KARKPYTITK PRERWSEEEH ERFLDALIMY GRDWKKIEEH 60 VGTKTTIQIR SHAQKYFLKV QKMGLAAGLP PQYPRRRLVM QQQQSSPAGS SSVAAPAILH 120 GQPQCLPPHH NVAVQSSIGW DCPGVLPPAT NDMQNLEWAS TSGAAAWGNH HGLIEPTAAF 180 DSFPGESSFM GAASFSNMSM DWTGTTSEMV TASIVQDETI ELPLSPDDMQ FAQVYRFIGD 240 IFDPDSPCPV ETHLQKLKNM DVITVKTILL VLRNLEDNLL SPQFEPIRRL LSTYDPNRGL 300 SGHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA01G0032300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106969 | 0.0 | AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646001.1 | 0.0 | protein REVEILLE 8 | ||||
TrEMBL | I1NKD3 | 0.0 | I1NKD3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0032300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 5e-48 | MYB_related family protein |