PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0001300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 425aa MW: 46909 Da PI: 4.8455

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0001300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	84.9	8.6e-27	21	121	1	98
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 q+ fw ++ ie+++df +h++P+ar+kki +++ m++ + P++lsk celf+ el++r+w a++ +r + +di++a+++t+ + ORGLA01G0001300.1 21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIASSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDITEAIASTESY 112 68899765566***************************************************************************** PP NF-YC 90 dflvdivpr 98 dflvdi + ORGLA01G0001300.1 113 DFLVDILHN 121 ***9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	2.6E-8	26	106	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	1.52E-15	28	120	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.0E-18	45	119	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MEQTLDVPRS LRLPTLKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM 60 MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DITEAIASTE SYDFLVDILH 120 NHREKHKSTP CSTLTTKRCR LVNQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPISHY 180 IPFQYPSLSQ EVSTMMASVP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIIGCSS 240 PAVLASMMSP ALLDVARASL NPPNSHSICM MNMINSSNPS GSSIGDINVA NQASLAPSGH 300 FNPAILQESS CPSFLYNNNN DTTVVVPESV DISGTMDVAS DVAGIVINGQ EEEHERETNV 360 EQNEIYESID IGIINASVAD GNKCSIRWDE LGTADDSLLD KFLEEFQARN DGVLHSGIVL 420 HEDHS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MEQTLDVPRS LRLPTLKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DITEAIASTE SYDFLVDILH  120
NHREKHKSTP CSTLTTKRCR LVNQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSTMMASVP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIIGCSS  240
PAVLASMMSP ALLDVARASL NPPNSHSICM MNMINSSNPS GSSIGDINVA NQASLAPSGH  300
FNPAILQESS CPSFLYNNNN DTTVVVPESV DISGTMDVAS DVAGIVINGQ EEEHERETNV  360
EQNEIYESID IGIINASVAD GNKCSIRWDE LGTADDSLLD KFLEEFQARN DGVLHSGIVL  420
HEDHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-17	31	119	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0001300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242226	0.0	AK242226.1 Oryza sativa Japonica Group cDNA, clone: J075175B02, full insert sequence.
GenBank	AP002969	0.0	AP002969.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0455C04.
GenBank	AP003610	0.0	AP003610.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0402A09.
GenBank	AP003727	0.0	AP003727.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672D08.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622453.1	0.0	uncharacterized protein LOC4326467 isoform X3
TrEMBL	I1NJH3	0.0	I1NJH3_ORYGL; Uncharacterized protein
STRING	ORGLA01G0001300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	4e-22	nuclear factor Y, subunit C4